Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0871
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synapti...    29   4.8  
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti...    29   4.8  
AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein.    29   4.8  

>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein
            C37C3.6b protein.
          Length = 2167

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 3    RVPGHMTTRHAEAPRLSPAAGGMVGLAPVPQPSS 104
            R+PGH TT     P L+P+    +G  P P PS+
Sbjct: 2070 RLPGHRTTSR---PMLTPSKNFSLGTPPTPSPST 2100


>Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical
           protein F17B5.2 protein.
          Length = 919

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = +2

Query: 206 LYIVSIYVNLVTVYNLFPGASVLSVNSVRPRLNVIIV*N*KLFVIKED 349
           LY++ I ++++ +YN FP A+ +  N     ++++ V N K   I+ED
Sbjct: 85  LYLLIILISMIFLYNFFP-ATAIETNRSSAVMSLLFVSN-KPMTIEED 130


>U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synaptic
           protein protein1, isoform d protein.
          Length = 1058

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 9   PGHMTTRHAEAPRLSPAAGGMVGLAPVPQPSSNEMLVQERGRPPGLEGE-YVANRPVRHS 185
           PG M TR   A   S  +GGM+GL    + ++ E+    R R  G   E    +RP    
Sbjct: 519 PGEMPTRPKSAANSSNKSGGMMGLF---RRNTAELAATIRERYQGNRSESATTDRPDVEH 575

Query: 186 RGRMP 200
           RG  P
Sbjct: 576 RGETP 580


>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
           protein protein1, isoform c protein.
          Length = 1211

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 9   PGHMTTRHAEAPRLSPAAGGMVGLAPVPQPSSNEMLVQERGRPPGLEGE-YVANRPVRHS 185
           PG M TR   A   S  +GGM+GL    + ++ E+    R R  G   E    +RP    
Sbjct: 672 PGEMPTRPKSAANSSNKSGGMMGLF---RRNTAELAATIRERYQGNRSESATTDRPDVEH 728

Query: 186 RGRMP 200
           RG  P
Sbjct: 729 RGETP 733


>AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein.
          Length = 1058

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 9   PGHMTTRHAEAPRLSPAAGGMVGLAPVPQPSSNEMLVQERGRPPGLEGE-YVANRPVRHS 185
           PG M TR   A   S  +GGM+GL    + ++ E+    R R  G   E    +RP    
Sbjct: 519 PGEMPTRPKSAANSSNKSGGMMGLF---RRNTAELAATIRERYQGNRSESATTDRPDVEH 575

Query: 186 RGRMP 200
           RG  P
Sbjct: 576 RGETP 580


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,873,316
Number of Sequences: 27780
Number of extensions: 347778
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)