Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0871
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    27   0.25 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 129 LAPGLASHYYWAEGQAQDQPY 67
           L  G+  H+Y A G  QD PY
Sbjct: 57  LRQGVPGHHYGAAGSQQDMPY 77


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 262 RFRFECE*RAPAS 300
           RFR+ECE R+  S
Sbjct: 59  RFRYECEGRSAGS 71


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 262 RFRFECE*RAPAS 300
           RFR+ECE R+  S
Sbjct: 59  RFRYECEGRSAGS 71


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 364 RYW*LTHSFKYP 399
           RYW +T  F YP
Sbjct: 144 RYWAITDPFTYP 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,964
Number of Sequences: 438
Number of extensions: 4465
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)