Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0870
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 33 0.029
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 1.9
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo... 27 1.9
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 27 3.3
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 27 3.3
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho... 26 4.4
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 4.4
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 26 4.4
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 26 4.4
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 26 5.8
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple... 25 7.7
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 7.7
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 25 7.7
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 33.5 bits (73), Expect = 0.029
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = +3
Query: 321 ILRDREVYNVLAPEQEEKRNAQRSRCNGRQINSWLQEVDDKWEKIKEGMLRRQHTEAQTL 500
+L+ REV + E+E+K N + + C G Q+ + +E+D+ IK G LR + Q
Sbjct: 66 VLKTREVQYI---EEEKKTNQELNDCRGNQLMT-QEEIDELRANIKAGGLRAEEAIKQLT 121
Query: 501 HAVK 512
++ K
Sbjct: 122 NSSK 125
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 106 VNPEPQIEIPHNLPPQMINEFMTQEKERH 192
++ P I+ P NLP ++ E M ++ERH
Sbjct: 15 LSKSPLIKKPENLPEWILPEAMKADRERH 43
>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 27.5 bits (58), Expect = 1.9
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = +1
Query: 49 PKDFNKYLMNRCTYTLQRNVNPEPQIEIPHNLPP---QMINEFMTQEKERHRLRIQHLVE 219
P+ FN+ + NR Y N E N+PP +M T K H I L +
Sbjct: 105 PETFNQCIENRINYAKHHNYGFEYVNVSQMNIPPVWAKMPAIIQTMNKHPHAKWIWWL-D 163
Query: 220 KDKLVLAVEQEIFE 261
+D L+L E I E
Sbjct: 164 QDALILNTELSIQE 177
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 163 EFMTQEKERHRLRIQHLVEKDKLVLAVEQEIFECTGALNAP 285
E E E+H ++ + L EK K L +EI + G+ N P
Sbjct: 175 EISDSEDEKHTVKQKPLREKKKKPLKSSEEISKDMGSYNLP 215
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 124 IEIPHNLPPQMINEFMTQEKERHRLRIQHLVEKDKLVLAVEQ 249
+ + N + +NE T ER L ++ V+ KL + VEQ
Sbjct: 425 LSLSTNSDGETLNEINTNNPEREHLIVRLKVDSQKLKIIVEQ 466
>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
phospholipase C |Schizosaccharomyces pombe|chr
2|||Manual
Length = 424
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 163 EFMTQEKERHRLRIQHLVEKDKLVLAVEQEIFECTGA 273
++M +E+ RLRI HL+ L++ V I C A
Sbjct: 324 QYMARERLHMRLRIAHLLISIPLIIGVHVAIAWCDPA 360
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 106 VNPEPQIEIPHNLPPQMINEFMTQ-EKERHRLRIQ 207
+ P+I +NL +I+E +T E+E H RIQ
Sbjct: 429 IQSNPKISTKYNLVANIIHESVTHAEEEFHNFRIQ 463
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -2
Query: 282 RVQRARALEDFLFNCQHKLIFFNQMLYP*TMPFFLLSHKFIYHLRWQIVWYLDLWLRI 109
R++ A +FL + LI F+ +L + F + FIY W+++ WL++
Sbjct: 484 RIKTAEVFYEFLCFLRPSLINFDTILRKSAITSFSVLWDFIYETS----WHIERWLKV 537
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 402 RCNVSAAHFVSLPALELARCKLLCHEE 322
RC V A F P L+ C +CH++
Sbjct: 426 RCAVCAELFSYSPGLQCENCSFVCHKK 452
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 427 KRWM--TNGKKLKRECFDVSTPRLKHYMQSNHGLGVE 531
K+W+ NGK LK ++ST L + Q+ LG E
Sbjct: 59 KKWVKYVNGKPLKPMKSEISTDYLNNAFQTIESLGAE 95
>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 447
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 85 TYTLQRNVNPEPQIEIPHNLPPQMINEFMTQEKERHRLR 201
TY L + +P+ + +P LPP ++++ E E++RLR
Sbjct: 352 TY-LTTHAHPQMRSNVPL-LPPTLVDQIYLWELEKNRLR 388
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +1
Query: 70 LMNRCTYTLQRNVNPEPQIEIPHNLPPQMINEFMTQEKERHRLRIQHLVEKDK 228
L N+ T L RN NP ++ ++PP + + ++ R +QH+ ++ +
Sbjct: 210 LCNQITALLARNGNPPIPMQKLQSMPPARLISIYQNQIQKFR-SLQHMQQQQQ 261
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 250 LVQLPAQAYLFQPDVVSVNDA--FLSPES*IHL 158
L+Q+P +YL D+ S DA F E IHL
Sbjct: 293 LMQIPLTSYLTGMDIASTGDAMVFTDVEDNIHL 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,118
Number of Sequences: 5004
Number of extensions: 65589
Number of successful extensions: 179
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -