Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0870
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64837-3|AAB04837.1| 782|Caenorhabditis elegans Hypothetical pr... 29 2.3
U56860-2|AAA98706.3| 225|Caenorhabditis elegans Defective phary... 29 3.1
AY766389-1|AAV34757.1| 170|Caenorhabditis elegans PHA-2 protein. 29 3.1
AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical... 28 5.4
Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z74037-5|CAA98493.3| 509|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z30662-4|CAA83139.3| 376|Caenorhabditis elegans Hypothetical pr... 28 7.1
AF000262-10|AAN60530.1| 350|Caenorhabditis elegans Twik family ... 28 7.1
AB044562-1|BAA96734.1| 509|Caenorhabditis elegans MIG-17 protein. 28 7.1
Z78013-4|CAD91627.1| 313|Caenorhabditis elegans Hypothetical pr... 27 9.4
>U64837-3|AAB04837.1| 782|Caenorhabditis elegans Hypothetical
protein T27E4.6 protein.
Length = 782
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 355 LQSRKRNEMRSAHVATEGRLTLGFKRWMTNGKKLK 459
L R +NE+RS VAT KRW N LK
Sbjct: 42 LDYRNKNEIRSGEVATPDLCKTLMKRWFQNLNSLK 76
>U56860-2|AAA98706.3| 225|Caenorhabditis elegans Defective pharynx
development protein2 protein.
Length = 225
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 342 YNVLAPEQEEKRNAQRSRCNGRQINSWLQEVDDKWEKIKE 461
+ L+P QE K+ A+ + RQ+ +W Q KW ++++
Sbjct: 157 HKYLSP-QERKKLAKSLSLSERQVKTWFQNRRAKWRRVRK 195
>AY766389-1|AAV34757.1| 170|Caenorhabditis elegans PHA-2 protein.
Length = 170
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 342 YNVLAPEQEEKRNAQRSRCNGRQINSWLQEVDDKWEKIKE 461
+ L+P QE K+ A+ + RQ+ +W Q KW ++++
Sbjct: 102 HKYLSP-QERKKLAKSLSLSERQVKTWFQNRRAKWRRVRK 140
>AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical
protein F25E5.1 protein.
Length = 1062
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/53 (22%), Positives = 29/53 (54%)
Frame = +3
Query: 321 ILRDREVYNVLAPEQEEKRNAQRSRCNGRQINSWLQEVDDKWEKIKEGMLRRQ 479
I + R V ++ A + ++K+N R + ++ W+Q D W ++ G ++++
Sbjct: 264 ITQSRPVSSISAYKLDDKKNVTILRV--KSVSYWIQVYPDYWTELNPGYIKKR 314
>Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical
protein T23D8.4 protein.
Length = 898
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +1
Query: 106 VNPEPQIEIPHNLPPQMINEFMTQEKERHRLRIQHLVEKDKLVLAVEQE 252
V+ +P+ E+ H++ + +NE M+ +R R QH+ KL+ E++
Sbjct: 291 VHFDPKEEVTHDVMIKKLNEVMSARGKRTTDRNQHVANLRKLLEVSEEK 339
>Z74037-5|CAA98493.3| 509|Caenorhabditis elegans Hypothetical
protein F57B7.4 protein.
Length = 509
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 403 EGRLTLGFKRWMTNGKKLKRECFDVSTPRLKHYMQS 510
EG K+WM + C ST +LKHY +S
Sbjct: 456 EGSCVQNTKKWMDCKDINSKTCSKYSTSKLKHYCKS 491
>Z30662-4|CAA83139.3| 376|Caenorhabditis elegans Hypothetical
protein T16H12.4 protein.
Length = 376
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 450 FPICHPPLEAKS*SAFRCNVSAAHFVSLPALELARCKL 337
F +CHP + S F C A S+PA E CKL
Sbjct: 269 FCVCHPDTKPISSRGFICTQCGARHCSIPA-ECPVCKL 305
>AF000262-10|AAN60530.1| 350|Caenorhabditis elegans Twik family of
potassium channelsprotein 37 protein.
Length = 350
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 151 QMINEFMTQEKERHRLRIQHLVEKDKLVLAVEQE 252
++IN+F+ ++ E+ QHLV K ++ VE++
Sbjct: 7 RLINKFIKRQMEKSSPETQHLVRKQSILKFVERK 40
>AB044562-1|BAA96734.1| 509|Caenorhabditis elegans MIG-17 protein.
Length = 509
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 403 EGRLTLGFKRWMTNGKKLKRECFDVSTPRLKHYMQS 510
EG K+WM + C ST +LKHY +S
Sbjct: 456 EGSCVQNTKKWMDCKDINSKTCSKYSTSKLKHYCKS 491
>Z78013-4|CAD91627.1| 313|Caenorhabditis elegans Hypothetical
protein F15B9.9 protein.
Length = 313
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 533 LKELGLCDFKTIPKIDTTHVPQIHGIKF*LARLNFELDCLC 655
+KE+GL DF PKI +T I K L F +D C
Sbjct: 81 VKEIGLTDFVVSPKIFSTRKMSIVPPKAGLPFSGFRIDIKC 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,675,484
Number of Sequences: 27780
Number of extensions: 372958
Number of successful extensions: 1040
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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