Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0866
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   2.9  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    27   3.8  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    27   3.8  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    26   6.7  

>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
            Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
 Frame = +1

Query: 61   QLVAGDV-LKFMASNENEQPLVVHGFSIAGYMWGEVYVHVMNNR------KMYQPVMDRI 219
            ++V  DV  +F+   ++  P+VV G       +G V V +  +R      K   P++  +
Sbjct: 727  RIVINDVPFEFVEHFDSRYPVVVGGLLPNEQRYGLVQVRIKRHRWHKKILKTNDPLIFSM 786

Query: 220  A-RRCGTLPRTSADHDRRAGRRLPEEPDHAEYSAGVYG 330
              RR  ++P  S    R   R L   P+H       YG
Sbjct: 787  GWRRFQSIPVYSISDSRTRNRMLKYTPEHMHCFGTFYG 824


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 95  LRTRMSSPSWCTGSRLLDTCGEKFTCT 175
           LRT    PS+C+ S++   C E +  T
Sbjct: 309 LRTDFPEPSFCSASKIRFNCDETYAAT 335


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +1

Query: 94  ASNENEQPLVVHGFSIA----GYMWGEVYVHVMNNRKMYQPVM 210
           A NE++Q  V+  F  A    GY W  +   + N+RK  Q ++
Sbjct: 857 AGNEDQQKEVLTSFETADPHHGYFWPSITKDIKNSRKTPQELL 899


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 304 HDLVLREDGGRHADRDLLMSAAESHTCARCGPLP 203
           H+ + +ED  +H + +L M       C R  P+P
Sbjct: 200 HEPIAKEDEMKHDEMELGMGIHNEPGCKRISPIP 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,329
Number of Sequences: 5004
Number of extensions: 54476
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)