Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0866
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0387 + 23038490-23038662,23039246-23039303,23039471-230395...    39   0.005
04_04_0549 - 26179668-26181176                                         32   0.57 
10_08_0086 - 14729240-14729494,14730107-14730307                       31   1.3  
06_01_0775 - 5795329-5795801,5796582-5796720,5796810-5797049,579...    30   2.3  
07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837     29   4.0  
04_04_0550 - 26187347-26188828                                         29   5.3  
03_06_0546 - 34646946-34647289,34647542-34647608                       29   5.3  
01_01_1011 - 8003080-8004216                                           28   9.2  

>11_06_0387 +
           23038490-23038662,23039246-23039303,23039471-23039551,
           23039640-23039675,23039821-23040060,23040155-23040293,
           23041417-23041889
          Length = 399

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 523 WDKSPHVQHYTHHPKEYLTALYAHLDASGLI 615
           W  SPHV HY HHP+EY  A+   L  + ++
Sbjct: 236 WQNSPHVGHYKHHPEEYRAAVTELLTKASML 266


>04_04_0549 - 26179668-26181176
          Length = 502

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 7   VLSVSCTPWQLMWPMKGSQLVAGDVLKFMASN 102
           V  VSC PW ++W +KG+  + GDV +++  N
Sbjct: 317 VALVSC-PWPVLWVIKGAGSLPGDVKEWLCEN 347


>10_08_0086 - 14729240-14729494,14730107-14730307
          Length = 151

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = +1

Query: 157 GEVYVHVMNNRKMYQPVMDRIARRCGTLPRTSADHDRRAGRRLPEEPDHAEYSAGVYGIP 336
           G ++  V+    +  PV+ + +  C  LP    +    A  +LP   D +    G  G+P
Sbjct: 69  GSLFHQVVAAADLLAPVLKQCSYHCAVLPNLCHNLPHHASTQLPRSGDGSSSGVGAKGVP 128


>06_01_0775 -
           5795329-5795801,5796582-5796720,5796810-5797049,
           5797278-5797313,5797421-5797501,5797937-5797994,
           5799440-5799630
          Length = 405

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 523 WDKSPHVQHYTHHPKEYLTAL 585
           W  SPHV HY  H  EY +A+
Sbjct: 242 WSDSPHVGHYMLHEAEYRSAV 262


>07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837
          Length = 730

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 79  RHRQLAVIPSWATLAATECTTP 14
           RHR L  +P W  LA  + TTP
Sbjct: 89  RHRPLPAVPGWQLLAVADETTP 110


>04_04_0550 - 26187347-26188828
          Length = 493

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 16  VSCTPWQLMWPMKGSQLVAGDVLKFMASNENEQPLVVHGFS 138
           VSC PW  +W   G+  + GDV  ++  N +    V H  S
Sbjct: 311 VSC-PWPTLWVFNGADTLPGDVRDWLRENTDADG-VAHAHS 349


>03_06_0546 - 34646946-34647289,34647542-34647608
          Length = 136

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 548 CCTWGDLSQHFHVP*SPCC 492
           CC  G +   FH+P  PCC
Sbjct: 70  CCYRGKMRDSFHLPEDPCC 88


>01_01_1011 - 8003080-8004216
          Length = 378

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 507 LIPMLHQESCTLRLLGSAPTGSLRESRNSAGAAHSGEW 394
           L+PML  +  TLRL  SA    L +    AG  H   W
Sbjct: 188 LVPMLGTDHATLRLYWSATGLWLSKEVKYAGLGHPDSW 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,798,060
Number of Sequences: 37544
Number of extensions: 422207
Number of successful extensions: 1254
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)