Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0866
         (755 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117288-1|AAI17289.1|  317|Homo sapiens tumor necrosis factor (...    32   2.6  
BC117286-1|AAI17287.1|  317|Homo sapiens tumor necrosis factor (...    32   2.6  
BC074890-1|AAH74890.1|  317|Homo sapiens tumor necrosis factor (...    32   2.6  
BC074823-1|AAH74823.1|  317|Homo sapiens tumor necrosis factor (...    32   2.6  
AL139382-2|CAI16926.1|  317|Homo sapiens tumor necrosis factor (...    32   2.6  
AF053712-1|AAC39731.1|  317|Homo sapiens osteoprotegerin ligand ...    32   2.6  
AF019047-1|AAB86811.1|  317|Homo sapiens RANKL protein.                32   2.6  
AB064269-1|BAB79694.1|  317|Homo sapiens receptor activator of n...    32   2.6  

>BC117288-1|AAI17289.1|  317|Homo sapiens tumor necrosis factor
           (ligand) superfamily, member 11 protein.
          Length = 317

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 549 LHSPPEGVPHRPVRASRRQWTYLTA*KNSTKDCSLALYTF 668
           LH+PP   PH+P  ASR  +  L         CS+AL+ +
Sbjct: 30  LHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALFFY 69


>BC117286-1|AAI17287.1|  317|Homo sapiens tumor necrosis factor
           (ligand) superfamily, member 11 protein.
          Length = 317

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 549 LHSPPEGVPHRPVRASRRQWTYLTA*KNSTKDCSLALYTF 668
           LH+PP   PH+P  ASR  +  L         CS+AL+ +
Sbjct: 30  LHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALFFY 69


>BC074890-1|AAH74890.1|  317|Homo sapiens tumor necrosis factor
           (ligand) superfamily, member 11 protein.
          Length = 317

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 549 LHSPPEGVPHRPVRASRRQWTYLTA*KNSTKDCSLALYTF 668
           LH+PP   PH+P  ASR  +  L         CS+AL+ +
Sbjct: 30  LHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALFFY 69


>BC074823-1|AAH74823.1|  317|Homo sapiens tumor necrosis factor
           (ligand) superfamily, member 11 protein.
          Length = 317

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 549 LHSPPEGVPHRPVRASRRQWTYLTA*KNSTKDCSLALYTF 668
           LH+PP   PH+P  ASR  +  L         CS+AL+ +
Sbjct: 30  LHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALFFY 69


>AL139382-2|CAI16926.1|  317|Homo sapiens tumor necrosis factor
           (ligand) superfamily, member 11 protein.
          Length = 317

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 549 LHSPPEGVPHRPVRASRRQWTYLTA*KNSTKDCSLALYTF 668
           LH+PP   PH+P  ASR  +  L         CS+AL+ +
Sbjct: 30  LHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALFFY 69


>AF053712-1|AAC39731.1|  317|Homo sapiens osteoprotegerin ligand
           protein.
          Length = 317

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 549 LHSPPEGVPHRPVRASRRQWTYLTA*KNSTKDCSLALYTF 668
           LH+PP   PH+P  ASR  +  L         CS+AL+ +
Sbjct: 30  LHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALFFY 69


>AF019047-1|AAB86811.1|  317|Homo sapiens RANKL protein.
          Length = 317

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 549 LHSPPEGVPHRPVRASRRQWTYLTA*KNSTKDCSLALYTF 668
           LH+PP   PH+P  ASR  +  L         CS+AL+ +
Sbjct: 30  LHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALFFY 69


>AB064269-1|BAB79694.1|  317|Homo sapiens receptor activator of
           nuclear factor kappa B ligand 1 protein.
          Length = 317

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 549 LHSPPEGVPHRPVRASRRQWTYLTA*KNSTKDCSLALYTF 668
           LH+PP   PH+P  ASR  +  L         CS+AL+ +
Sbjct: 30  LHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALFFY 69


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,109,654
Number of Sequences: 237096
Number of extensions: 2299062
Number of successful extensions: 6327
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6327
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9127122082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)