Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0864
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    29   0.96 
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.2  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    27   3.9  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   6.8  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    25   9.0  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   9.0  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    25   9.0  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   9.0  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   9.0  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
 Frame = -2

Query: 485 ITRNPSNTIQTKVKIYVMIIKTAHDILPP-----TRALHAR-*TFWRVAPVVKQPRQSNI 324
           +   P N I T V++Y  I+KT   I PP     ++ L AR  T  R    V+Q  QS +
Sbjct: 66  VREGPVNDISTIVQLYEEIVKTGFFINPPPFESYSQTLVARITTLGRPKLQVQQEAQSEV 125

Query: 323 NPSAAMHALPTMNIICRASIQINES 249
              A+ +    ++ +   + + N S
Sbjct: 126 YQRASTNTQQQVSNVSHGNFKPNSS 150


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 672 FMFILAMVSCILVIL-SLVHYLMCLSANYAHT 764
           F+ I+A+ + + V L  L H+LM L+ NY++T
Sbjct: 130 FILIIALDALLTVSLFGLFHHLMFLTTNYSYT 161


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 510 WKLCSKP-ENIVSSTCIDFTQFDFMFPSTVKQEDMKICEPHKI 635
           WKLC       V S   +F  +DF  PS++ Q+ M    P  I
Sbjct: 188 WKLCGFSFSQSVESARYEFNDYDFGIPSSL-QQSMDFLAPEYI 229


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 453 CLDSVARISSNNNIFVHNIWKLCSKPENIVSSTCIDFTQFDFMFPS 590
           C+D+     S N + V  IWKL  + +N  SS+      F  +FPS
Sbjct: 764 CMDACLSYLSGN-LSVDEIWKLGFQKDNSDSSSESSADIFQDVFPS 808


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 742 KHIK*CTKLNMTKIHDTIARININSAFST 656
           +HIK CT L++T    +++++N + A  T
Sbjct: 222 EHIKRCTSLDLTNSVFSLSKVNTDCAILT 250


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 634 ILCGSHIFMSSCFTVEGNMKSN*VKSIQVDDTIFSGFE 521
           I  G H     C+++  N  S+ +  I    TIF G E
Sbjct: 354 IFSGGHDGTIRCWSLPANQTSDSISKILTGSTIFQGHE 391


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 515 FPDIVNKNVVITRNPSNTIQTKVKIY 438
           +P+IV +++    NP NT+Q++   Y
Sbjct: 156 WPNIVRRHIATKANPVNTLQSQFSGY 181


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 498 VHNIWKLCSKPENIVSSTCIDFTQFDF 578
           ++NIW   SKPE   +S   DF    F
Sbjct: 187 LNNIWASLSKPEGFENSVINDFFDVGF 213


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 105 PIILLILIYF*NQNFWSEDTQLNT 34
           P+I++IL  F +   WS+ T +NT
Sbjct: 270 PLIVVILFAFLSNFSWSDSTSVNT 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,381,689
Number of Sequences: 5004
Number of extensions: 75502
Number of successful extensions: 199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)