Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0864
(765 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23139-3|AAK31486.2| 275|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AC024200-14|AAF36005.1| 557|Caenorhabditis elegans Hypothetical... 29 3.6
Z77663-18|CAC70092.2| 191|Caenorhabditis elegans Hypothetical p... 29 4.8
Z77654-6|CAB01128.3| 191|Caenorhabditis elegans Hypothetical pr... 29 4.8
U80952-4|AAB38095.1| 662|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z34533-7|CAA84301.2| 369|Caenorhabditis elegans Hypothetical pr... 28 8.4
U39849-6|AAM81124.1| 642|Caenorhabditis elegans Hypothetical pr... 28 8.4
U39849-5|AAA81048.2| 663|Caenorhabditis elegans Hypothetical pr... 28 8.4
AY158691-1|AAN41643.1| 369|Caenorhabditis elegans choline kinas... 28 8.4
>U23139-3|AAK31486.2| 275|Caenorhabditis elegans Hypothetical
protein F13H8.4 protein.
Length = 275
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +1
Query: 232 VRRSIPLS-LIWIEALQMIFIVGSAXXXXXXXXXXXXXXXXXXXXRQKVYRAWRARVGGR 408
VRRS+ ++ W++ +Q+ FIV + R+ +Y+ AR GG+
Sbjct: 13 VRRSLKINDWPWLDKVQVFFIVIAVLMGLFSLFFLCIGFTATGGTRETMYKDDEARCGGK 72
Query: 409 ISCAVFMIITYILTFVWIVLLGFL 480
+C + M+I + L W+ ++ +
Sbjct: 73 FACVIAMLIDFFLIIAWLFIISIV 96
Score = 37.1 bits (82), Expect = 0.014
Identities = 22/90 (24%), Positives = 42/90 (46%)
Frame = +3
Query: 492 IFVHNIWKLCSKPENIVSSTCIDFTQFDFMFPSTVKQEDMKICEPHKIKLFCKDYVEKAE 671
IF + +LC CID F + S+ ++++C ++ FC A
Sbjct: 101 IFYYFFDRLCMNLPGYTDGDCIDLHVF-WPLVSSFANSNLRMCGGD-VQQFCA-LTSTAF 157
Query: 672 FMFILAMVSCILVILSLVHYLMCLSANYAH 761
+++ V C+L+IL ++ + ++NYAH
Sbjct: 158 SWYVIGWVGCVLIILGVLLFFGIHASNYAH 187
>AC024200-14|AAF36005.1| 557|Caenorhabditis elegans Hypothetical
protein Y71F9AL.4 protein.
Length = 557
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Frame = +3
Query: 420 RFYDHNIYFDL-CLDSVA-RISSNNNIFVH-NIWKLCSKPENIV------SSTCIDFTQF 572
+F D N Y ++ C D ++ + N ++H N K+C+KPE V +TC F Q
Sbjct: 196 KFKDLNRYPNIQCWDRGRFTLAGDENFYIHANFVKICTKPERFVCTQGPMENTCTHFWQM 255
Query: 573 DFMFPST 593
ST
Sbjct: 256 ALSLGST 262
>Z77663-18|CAC70092.2| 191|Caenorhabditis elegans Hypothetical
protein C50B8.5 protein.
Length = 191
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 666 AEFMFILAMVSCILVILSLVHYLMCLSANY 755
+E++++L ++ +L++L LV YL+ NY
Sbjct: 69 SEWLYLLVLMLIVLILLGLVGYLLYYIVNY 98
>Z77654-6|CAB01128.3| 191|Caenorhabditis elegans Hypothetical
protein C50B8.5 protein.
Length = 191
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 666 AEFMFILAMVSCILVILSLVHYLMCLSANY 755
+E++++L ++ +L++L LV YL+ NY
Sbjct: 69 SEWLYLLVLMLIVLILLGLVGYLLYYIVNY 98
>U80952-4|AAB38095.1| 662|Caenorhabditis elegans Hypothetical
protein F54H5.5 protein.
Length = 662
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 475 FLVITTFLFTISGNYVQN 528
+L IT F FTISG+YV+N
Sbjct: 326 YLNITDFSFTISGSYVRN 343
>Z34533-7|CAA84301.2| 369|Caenorhabditis elegans Hypothetical
protein B0285.9 protein.
Length = 369
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 540 VSSTCIDFTQFDFMFPSTVKQEDMKICEPHKIKLFCKDYVE 662
+S T ID+ FP +K I P I++FC+ YVE
Sbjct: 251 LSETAIDYR---VPFPPGIKMNGDLIDNPPNIQIFCEAYVE 288
>U39849-6|AAM81124.1| 642|Caenorhabditis elegans Hypothetical
protein C06A8.1b protein.
Length = 642
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 456 LDSVARISSNNNIFVHNIWKLCSKPEN---IVSSTCIDFTQFDF 578
L+ V R+S ++FV W + S P N + SS+ I + D+
Sbjct: 69 LERVERLSEGGSVFVDMTWHMGSDPANVDKVTSSSSIAASMLDY 112
>U39849-5|AAA81048.2| 663|Caenorhabditis elegans Hypothetical
protein C06A8.1a protein.
Length = 663
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 456 LDSVARISSNNNIFVHNIWKLCSKPEN---IVSSTCIDFTQFDF 578
L+ V R+S ++FV W + S P N + SS+ I + D+
Sbjct: 90 LERVERLSEGGSVFVDMTWHMGSDPANVDKVTSSSSIAASMLDY 133
>AY158691-1|AAN41643.1| 369|Caenorhabditis elegans choline kinase
CKB-2 protein.
Length = 369
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 540 VSSTCIDFTQFDFMFPSTVKQEDMKICEPHKIKLFCKDYVE 662
+S T ID+ FP +K I P I++FC+ YVE
Sbjct: 251 LSETAIDYR---VPFPPGIKMNGDLIDNPPNIQIFCEAYVE 288
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,711,563
Number of Sequences: 27780
Number of extensions: 431255
Number of successful extensions: 1144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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