BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0864 (765 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U23139-3|AAK31486.2| 275|Caenorhabditis elegans Hypothetical pr... 42 5e-04 AC024200-14|AAF36005.1| 557|Caenorhabditis elegans Hypothetical... 29 3.6 Z77663-18|CAC70092.2| 191|Caenorhabditis elegans Hypothetical p... 29 4.8 Z77654-6|CAB01128.3| 191|Caenorhabditis elegans Hypothetical pr... 29 4.8 U80952-4|AAB38095.1| 662|Caenorhabditis elegans Hypothetical pr... 28 6.3 Z34533-7|CAA84301.2| 369|Caenorhabditis elegans Hypothetical pr... 28 8.4 U39849-6|AAM81124.1| 642|Caenorhabditis elegans Hypothetical pr... 28 8.4 U39849-5|AAA81048.2| 663|Caenorhabditis elegans Hypothetical pr... 28 8.4 AY158691-1|AAN41643.1| 369|Caenorhabditis elegans choline kinas... 28 8.4 >U23139-3|AAK31486.2| 275|Caenorhabditis elegans Hypothetical protein F13H8.4 protein. Length = 275 Score = 41.9 bits (94), Expect = 5e-04 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = +1 Query: 232 VRRSIPLS-LIWIEALQMIFIVGSAXXXXXXXXXXXXXXXXXXXXRQKVYRAWRARVGGR 408 VRRS+ ++ W++ +Q+ FIV + R+ +Y+ AR GG+ Sbjct: 13 VRRSLKINDWPWLDKVQVFFIVIAVLMGLFSLFFLCIGFTATGGTRETMYKDDEARCGGK 72 Query: 409 ISCAVFMIITYILTFVWIVLLGFL 480 +C + M+I + L W+ ++ + Sbjct: 73 FACVIAMLIDFFLIIAWLFIISIV 96 Score = 37.1 bits (82), Expect = 0.014 Identities = 22/90 (24%), Positives = 42/90 (46%) Frame = +3 Query: 492 IFVHNIWKLCSKPENIVSSTCIDFTQFDFMFPSTVKQEDMKICEPHKIKLFCKDYVEKAE 671 IF + +LC CID F + S+ ++++C ++ FC A Sbjct: 101 IFYYFFDRLCMNLPGYTDGDCIDLHVF-WPLVSSFANSNLRMCGGD-VQQFCA-LTSTAF 157 Query: 672 FMFILAMVSCILVILSLVHYLMCLSANYAH 761 +++ V C+L+IL ++ + ++NYAH Sbjct: 158 SWYVIGWVGCVLIILGVLLFFGIHASNYAH 187 >AC024200-14|AAF36005.1| 557|Caenorhabditis elegans Hypothetical protein Y71F9AL.4 protein. Length = 557 Score = 29.1 bits (62), Expect = 3.6 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%) Frame = +3 Query: 420 RFYDHNIYFDL-CLDSVA-RISSNNNIFVH-NIWKLCSKPENIV------SSTCIDFTQF 572 +F D N Y ++ C D ++ + N ++H N K+C+KPE V +TC F Q Sbjct: 196 KFKDLNRYPNIQCWDRGRFTLAGDENFYIHANFVKICTKPERFVCTQGPMENTCTHFWQM 255 Query: 573 DFMFPST 593 ST Sbjct: 256 ALSLGST 262 >Z77663-18|CAC70092.2| 191|Caenorhabditis elegans Hypothetical protein C50B8.5 protein. Length = 191 Score = 28.7 bits (61), Expect = 4.8 Identities = 10/30 (33%), Positives = 21/30 (70%) Frame = +3 Query: 666 AEFMFILAMVSCILVILSLVHYLMCLSANY 755 +E++++L ++ +L++L LV YL+ NY Sbjct: 69 SEWLYLLVLMLIVLILLGLVGYLLYYIVNY 98 >Z77654-6|CAB01128.3| 191|Caenorhabditis elegans Hypothetical protein C50B8.5 protein. Length = 191 Score = 28.7 bits (61), Expect = 4.8 Identities = 10/30 (33%), Positives = 21/30 (70%) Frame = +3 Query: 666 AEFMFILAMVSCILVILSLVHYLMCLSANY 755 +E++++L ++ +L++L LV YL+ NY Sbjct: 69 SEWLYLLVLMLIVLILLGLVGYLLYYIVNY 98 >U80952-4|AAB38095.1| 662|Caenorhabditis elegans Hypothetical protein F54H5.5 protein. Length = 662 Score = 28.3 bits (60), Expect = 6.3 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = +1 Query: 475 FLVITTFLFTISGNYVQN 528 +L IT F FTISG+YV+N Sbjct: 326 YLNITDFSFTISGSYVRN 343 >Z34533-7|CAA84301.2| 369|Caenorhabditis elegans Hypothetical protein B0285.9 protein. Length = 369 Score = 27.9 bits (59), Expect = 8.4 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +3 Query: 540 VSSTCIDFTQFDFMFPSTVKQEDMKICEPHKIKLFCKDYVE 662 +S T ID+ FP +K I P I++FC+ YVE Sbjct: 251 LSETAIDYR---VPFPPGIKMNGDLIDNPPNIQIFCEAYVE 288 >U39849-6|AAM81124.1| 642|Caenorhabditis elegans Hypothetical protein C06A8.1b protein. Length = 642 Score = 27.9 bits (59), Expect = 8.4 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +3 Query: 456 LDSVARISSNNNIFVHNIWKLCSKPEN---IVSSTCIDFTQFDF 578 L+ V R+S ++FV W + S P N + SS+ I + D+ Sbjct: 69 LERVERLSEGGSVFVDMTWHMGSDPANVDKVTSSSSIAASMLDY 112 >U39849-5|AAA81048.2| 663|Caenorhabditis elegans Hypothetical protein C06A8.1a protein. Length = 663 Score = 27.9 bits (59), Expect = 8.4 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +3 Query: 456 LDSVARISSNNNIFVHNIWKLCSKPEN---IVSSTCIDFTQFDF 578 L+ V R+S ++FV W + S P N + SS+ I + D+ Sbjct: 90 LERVERLSEGGSVFVDMTWHMGSDPANVDKVTSSSSIAASMLDY 133 >AY158691-1|AAN41643.1| 369|Caenorhabditis elegans choline kinase CKB-2 protein. Length = 369 Score = 27.9 bits (59), Expect = 8.4 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +3 Query: 540 VSSTCIDFTQFDFMFPSTVKQEDMKICEPHKIKLFCKDYVE 662 +S T ID+ FP +K I P I++FC+ YVE Sbjct: 251 LSETAIDYR---VPFPPGIKMNGDLIDNPPNIQIFCEAYVE 288 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,711,563 Number of Sequences: 27780 Number of extensions: 431255 Number of successful extensions: 1144 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1144 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1830096852 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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