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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0864
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to vil...    29   3.4  
At1g09930.1 68414.m01117 oligopeptide transporter OPT family pro...    29   3.4  
At5g48110.1 68418.m05943 terpene synthase/cyclase family protein       29   4.5  
At1g10950.1 68414.m01257 endomembrane protein 70, putative             29   4.5  
At4g17700.1 68417.m02644 hypothetical protein contains Pfam prof...    28   7.8  
At3g01670.1 68416.m00098 expressed protein                             28   7.8  
At1g54115.1 68414.m06169 cation exchanger, putative                    28   7.8  

>At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to villin
           3 (VLN3) [Arabidopsis thaliana] GI:3415117
          Length = 965

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 496 LFTISGNYVQNQKILYHQLV*ISLNSTSCFL 588
           L  +SG  V N K L  + V  SLNS  CFL
Sbjct: 522 LIQVSGTGVHNNKALQVEAVATSLNSYDCFL 552


>At1g09930.1 68414.m01117 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 734

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 373 VYRAWRARVGGRISCAVFMIITYILTFVWIVLLGFLVIT 489
           ++RA   +   R+S   F +I ++ +F W +   +L +T
Sbjct: 194 LFRALHEKDNARMSRGKFFVIAFVCSFAWYIFPAYLFLT 232


>At5g48110.1 68418.m05943 terpene synthase/cyclase family protein 
          Length = 575

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 321 IYVTLSRLFDYRCNSPESLSGVESSGRWENIVCRFYDH 434
           ++  +  L+D  C  PE+++  E+  RWE       DH
Sbjct: 327 LWTIIDDLYDAYCTLPEAIAFTENMERWETDAIDMPDH 364


>At1g10950.1 68414.m01257 endomembrane protein 70, putative
          Length = 589

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 158 TIMCCLGVGVFCGTM-YRGSALSI 226
           T+M CLG+G+ CG + Y GS L +
Sbjct: 556 TMMFCLGLGILCGAVGYLGSNLFV 579


>At4g17700.1 68417.m02644 hypothetical protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 254

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -2

Query: 479 RNPSNTIQTKVKIYVMIIKTAHDILPPTRALHAR*TFWRV 360
           R+P N   +K+ I ++ I+T  ++ PP+  L AR  F+ +
Sbjct: 168 RSPKNPNLSKLVIVMVAIETKDNMEPPSERLKARNAFFYI 207


>At3g01670.1 68416.m00098 expressed protein
          Length = 822

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 237 TKYSTFIDLD*SPADDIHCGKCMHGSTRIYVTLSRL-FDYRCNSPESLSGVESSGRWE 407
           T + TF DL    + +I C KC+HG     +  S L  D R  +  S+  + S  RW+
Sbjct: 195 TSFETFADLIDQISCEIDC-KCLHGGESHGMMTSGLHLDSRNTTTFSVLSLVSKYRWD 251


>At1g54115.1 68414.m06169 cation exchanger, putative
          Length = 644

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 412 SCAVFMIITYILTFVWIVLLGFLVITT 492
           SC  F I+ YIL  VW+V L +L+  T
Sbjct: 128 SCRDFKILGYILLGVWLVALFYLLGNT 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,267,775
Number of Sequences: 28952
Number of extensions: 382927
Number of successful extensions: 932
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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