Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0860
(545 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellu... 144 1e-33
UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellul... 125 8e-28
UniRef50_Q8S6I4 Cluster: Putative 40s ribosomal protein S23; n=4... 116 4e-25
UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellu... 93 4e-18
UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17; Archa... 83 3e-15
UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4; ce... 75 1e-12
UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Ze... 60 2e-08
UniRef50_Q8BGG2 Cluster: Adult male spinal cord cDNA, RIKEN full... 60 4e-08
UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;... 55 1e-06
UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1; ... 48 1e-04
UniRef50_UPI00015B40B9 Cluster: PREDICTED: similar to mitochondr... 47 3e-04
UniRef50_Q1HPJ4 Cluster: Mitochondrial ribosomal protein S12; n=... 45 0.001
UniRef50_Q9NEH6 Cluster: EG:BACH59J11.1 protein; n=2; Bilateria|... 41 0.016
UniRef50_P10735 Cluster: 40S ribosomal protein S12, mitochondria... 41 0.016
UniRef50_UPI0000D55D7C Cluster: PREDICTED: similar to 40S riboso... 39 0.087
UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1; ... 38 0.11
UniRef50_Q7SZ18 Cluster: Mrps12-prov protein; n=8; Euteleostomi|... 38 0.20
UniRef50_Q9XTY5 Cluster: Putative uncharacterized protein; n=2; ... 36 0.81
UniRef50_A5DX89 Cluster: 30S ribosomal protein S12; n=6; Sacchar... 36 0.81
UniRef50_O15235 Cluster: 28S ribosomal protein S12, mitochondria... 36 0.81
UniRef50_Q11EN9 Cluster: Putative uncharacterized protein; n=1; ... 34 2.5
UniRef50_O85884 Cluster: Putative uncharacterized protein orf433... 33 4.3
UniRef50_A0CUX9 Cluster: Chromosome undetermined scaffold_29, wh... 33 4.3
UniRef50_O70089 Cluster: 30S ribosomal protein S12; n=35; cellul... 33 5.7
UniRef50_A4XF13 Cluster: Transcriptional regulator, LysR family;... 32 7.5
>UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellular
organisms|Rep: 40S ribosomal protein S23 - Homo sapiens
(Human)
Length = 143
Score = 144 bits (349), Expect = 1e-33
Identities = 66/80 (82%), Positives = 74/80 (92%)
Frame = +3
Query: 21 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 200
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 201 QPNSAIRKCVRVQLIKNGRK 260
QPNSAIRKCVRVQLIKNG+K
Sbjct: 61 QPNSAIRKCVRVQLIKNGKK 80
Score = 60.9 bits (141), Expect = 2e-08
Identities = 29/42 (69%), Positives = 29/42 (69%)
Frame = +1
Query: 322 VAGFGRKGHAVGDIPGVRFKXXXXXXXXXXXXYKEKKERPRS 447
VAGFGRKGHAVGDIPGVRFK YK KKERPRS
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 44.4 bits (100), Expect = 0.002
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +2
Query: 254 KKVTAFVPRDGCLNHIEENDE 316
KK+TAFVP DGCLN IEENDE
Sbjct: 79 KKITAFVPNDGCLNFIEENDE 99
>UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellular
organisms|Rep: 40S ribosomal protein S23 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 145
Score = 125 bits (301), Expect = 8e-28
Identities = 55/79 (69%), Positives = 68/79 (86%)
Frame = +3
Query: 24 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 203
GKPRG+ +ARK HRR RWA+ +KK +GT +K++PFGG+SHAKGIVLEK+G+E+KQ
Sbjct: 4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQ 63
Query: 204 PNSAIRKCVRVQLIKNGRK 260
PNSAIRKCVRVQLIKNG+K
Sbjct: 64 PNSAIRKCVRVQLIKNGKK 82
Score = 53.2 bits (122), Expect = 4e-06
Identities = 25/42 (59%), Positives = 28/42 (66%)
Frame = +1
Query: 322 VAGFGRKGHAVGDIPGVRFKXXXXXXXXXXXXYKEKKERPRS 447
+AGFGRKG A GDIPGVRFK +KEKKE+PRS
Sbjct: 104 LAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
Score = 43.2 bits (97), Expect = 0.004
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2
Query: 254 KKVTAFVPRDGCLNHIEENDE 316
KKVTAFVP DGCLN ++ENDE
Sbjct: 81 KKVTAFVPNDGCLNFVDENDE 101
>UniRef50_Q8S6I4 Cluster: Putative 40s ribosomal protein S23; n=4;
Oryza sativa|Rep: Putative 40s ribosomal protein S23 -
Oryza sativa (Rice)
Length = 301
Score = 116 bits (279), Expect = 4e-25
Identities = 52/78 (66%), Positives = 61/78 (78%)
Frame = +3
Query: 27 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 206
K G+ RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 207 NSAIRKCVRVQLIKNGRK 260
NSAI KC RVQL+KNG+K
Sbjct: 133 NSAICKCARVQLVKNGKK 150
Score = 36.3 bits (80), Expect = 0.46
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 254 KKVTAFVPRDGCLNHIEEN 310
KK+ AFVP DGCLN I+EN
Sbjct: 149 KKIAAFVPNDGCLNFIKEN 167
>UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellular
organisms|Rep: 30S ribosomal protein S12P - Uncultured
methanogenic archaeon RC-I
Length = 142
Score = 93.1 bits (221), Expect = 4e-18
Identities = 43/70 (61%), Positives = 55/70 (78%)
Frame = +3
Query: 51 RKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 230
RK V+ R+ RW+D+++ + + KA+P GA AKGIVLEKVGVEAKQPNSAIRKC+
Sbjct: 9 RKLVHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCI 68
Query: 231 RVQLIKNGRK 260
R+QLIKNGR+
Sbjct: 69 RIQLIKNGRQ 78
>UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17;
Archaea|Rep: 30S ribosomal protein S12P - Pyrobaculum
aerophilum
Length = 147
Score = 83.4 bits (197), Expect = 3e-15
Identities = 39/76 (51%), Positives = 53/76 (69%)
Frame = +3
Query: 30 PRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 209
P G+ K R++ RW D +K+ +G K +P GA A+GIVLEKVGVEA++PN
Sbjct: 7 PYGLFAGGKLKRKRQKFRWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPN 66
Query: 210 SAIRKCVRVQLIKNGR 257
+A+RKCVRVQL+KNG+
Sbjct: 67 AAVRKCVRVQLVKNGK 82
Score = 34.3 bits (75), Expect = 1.9
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +2
Query: 254 KKVTAFVPRDGCLNHIEENDE 316
K VTAFVP DG LN+I E+DE
Sbjct: 82 KVVTAFVPLDGSLNYINEHDE 102
Score = 33.5 bits (73), Expect = 3.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 334 GRKGHAVGDIPGVRFKXXXXXXXXXXXXYKEKKERP 441
G +G ++GDIPGVRFK ++ KK++P
Sbjct: 110 GPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145
>UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4;
cellular organisms|Rep: Protein splicing (Intein) site -
Caldivirga maquilingensis IC-167
Length = 661
Score = 74.5 bits (175), Expect = 1e-12
Identities = 36/74 (48%), Positives = 50/74 (67%)
Frame = +3
Query: 30 PRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 209
P G+ ARK R++ RW+D ++KK +G K +P GA A+GIVLEKVGVEA++PN
Sbjct: 7 PLGLYAARKLRRKRQKFRWSDIQYKKRALGFIKKYDPLEGAPMARGIVLEKVGVEARKPN 66
Query: 210 SAIRKCVRVQLIKN 251
+A+RKCV + N
Sbjct: 67 AAVRKCVTPDTLIN 80
>UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Zea
mays|Rep: Putative 40S ribosomal protein - Zea mays
(Maize)
Length = 309
Score = 60.5 bits (140), Expect = 2e-08
Identities = 27/42 (64%), Positives = 30/42 (71%)
Frame = +1
Query: 322 VAGFGRKGHAVGDIPGVRFKXXXXXXXXXXXXYKEKKERPRS 447
+AGFGRKGHAVGDIPGVRFK +KEKKE+PRS
Sbjct: 228 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 269
>UniRef50_Q8BGG2 Cluster: Adult male spinal cord cDNA, RIKEN
full-length enriched library, clone:A330001L23
product:hypothetical protein, full insert sequence; n=8;
Euarchontoglires|Rep: Adult male spinal cord cDNA, RIKEN
full-length enriched library, clone:A330001L23
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 154
Score = 59.7 bits (138), Expect = 4e-08
Identities = 33/85 (38%), Positives = 44/85 (51%)
Frame = -1
Query: 260 LSSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPS 81
L VLNEL+ DA DGR+ L F + ++LC+R T +R+ L VGFL FV P
Sbjct: 31 LLPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGTPKRIGLQGCAQVGFLVLFVMPL 90
Query: 80 LFTTVVHVLTRRSYSSGFTHLDSTT 6
L +V L S ++ HL T
Sbjct: 91 LVPSVTAELPGSSETTTLAHLAGAT 115
>UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;
n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
Mus musculus
Length = 143
Score = 54.8 bits (126), Expect = 1e-06
Identities = 30/80 (37%), Positives = 41/80 (51%)
Frame = -1
Query: 260 LSSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPS 81
L VLNEL+ DA DGR+ L F + ++LC+R +R+ L VGFL FV P
Sbjct: 62 LLPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGAPKRIGLQGCAQVGFLVLFVMPL 121
Query: 80 LFTTVVHVLTRRSYSSGFTH 21
L +V L S ++ H
Sbjct: 122 LVPSVTAELPGSSETTTLAH 141
Score = 34.7 bits (76), Expect = 1.4
Identities = 13/31 (41%), Positives = 24/31 (77%)
Frame = -3
Query: 420 VESEERXVGYXYHLKTNSGNVTDGVTFTTES 328
++S++R +GY HLK +S ++T +TF+T+S
Sbjct: 9 LQSQQRNIGYFNHLKEDSRDITYSMTFSTKS 39
>UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 102
Score = 48.0 bits (109), Expect = 1e-04
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = -2
Query: 277 GDECGHFLPFLMSCTRTHLRMAELGCLASTPTFSRTMPFA 158
G + FLPFL++ T TH +AE GCL S P FS+T+P A
Sbjct: 63 GTKAVTFLPFLINWTSTHFSIAEFGCLDSIPIFSKTIPLA 102
Score = 31.9 bits (69), Expect = 9.9
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -3
Query: 315 SSFSSMWFRQPSRGTNAVTF 256
SSFSS F+QPS GT AVTF
Sbjct: 50 SSFSSTKFKQPSFGTKAVTF 69
>UniRef50_UPI00015B40B9 Cluster: PREDICTED: similar to mitochondrial
ribosomal protein S12; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to mitochondrial ribosomal protein
S12 - Nasonia vitripennis
Length = 173
Score = 46.8 bits (106), Expect = 3e-04
Identities = 23/42 (54%), Positives = 31/42 (73%)
Frame = +3
Query: 135 NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
NPF GA AKG+VL+ + + K+PNSA RKCV V+L NG++
Sbjct: 83 NPFNGAPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-SNGKE 123
>UniRef50_Q1HPJ4 Cluster: Mitochondrial ribosomal protein S12; n=3;
Coelomata|Rep: Mitochondrial ribosomal protein S12 -
Bombyx mori (Silk moth)
Length = 111
Score = 44.8 bits (101), Expect = 0.001
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = +3
Query: 111 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
H+ + NP G AKG+VL+ V + K+PNSA RKCV V+L NG++
Sbjct: 13 HIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKE 61
>UniRef50_Q9NEH6 Cluster: EG:BACH59J11.1 protein; n=2;
Bilateria|Rep: EG:BACH59J11.1 protein - Drosophila
melanogaster (Fruit fly)
Length = 154
Score = 41.1 bits (92), Expect = 0.016
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +3
Query: 111 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
H+ T+ P G AKG+VL+ + + K+PNSA RKCV V+L
Sbjct: 56 HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL 99
>UniRef50_P10735 Cluster: 40S ribosomal protein S12, mitochondrial
precursor; n=7; Coelomata|Rep: 40S ribosomal protein
S12, mitochondrial precursor - Drosophila melanogaster
(Fruit fly)
Length = 140
Score = 41.1 bits (92), Expect = 0.016
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +3
Query: 111 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
H+ T+ P G AKG+VL+ + + K+PNSA RKCV V+L
Sbjct: 42 HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL 85
>UniRef50_UPI0000D55D7C Cluster: PREDICTED: similar to 40S ribosomal
protein S12, mitochondrial precursor (MT-RPS12)
(Technical knockout locus protein); n=2; Coelomata|Rep:
PREDICTED: similar to 40S ribosomal protein S12,
mitochondrial precursor (MT-RPS12) (Technical knockout
locus protein) - Tribolium castaneum
Length = 156
Score = 38.7 bits (86), Expect = 0.087
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +3
Query: 111 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
H+ + P G KG+VL+ + + K+PNSA RKCV V+L NG++
Sbjct: 60 HIKERKPRRPLDGKPFMKGVVLKTLIKKPKKPNSANRKCVLVRL-SNGKE 108
>UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 128
Score = 38.3 bits (85), Expect = 0.11
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +1
Query: 322 VAGFGRKGHAVGDIPGVRFK 381
++GFG KGHAVGDI GVRF+
Sbjct: 71 ISGFGHKGHAVGDIRGVRFE 90
>UniRef50_Q7SZ18 Cluster: Mrps12-prov protein; n=8;
Euteleostomi|Rep: Mrps12-prov protein - Xenopus laevis
(African clawed frog)
Length = 150
Score = 37.5 bits (83), Expect = 0.20
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +3
Query: 138 PFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
P G KG+VL+ + + K+PNSA RKC RV+L NG++
Sbjct: 62 PTFGCPQLKGVVLKTMIRKPKKPNSANRKCARVRL-SNGKE 101
>UniRef50_Q9XTY5 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 157
Score = 35.5 bits (78), Expect = 0.81
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +3
Query: 147 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
G SH KGIVL+ V K+PNS RKC V+L
Sbjct: 72 GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103
>UniRef50_A5DX89 Cluster: 30S ribosomal protein S12; n=6;
Saccharomycetales|Rep: 30S ribosomal protein S12 -
Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 183
Score = 35.5 bits (78), Expect = 0.81
Identities = 15/32 (46%), Positives = 25/32 (78%)
Frame = +3
Query: 162 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGR 257
+G++L + ++ K+PNSA+RKC RV+L NG+
Sbjct: 90 RGVILRIMILKPKKPNSALRKCARVRL-SNGK 120
>UniRef50_O15235 Cluster: 28S ribosomal protein S12, mitochondrial
precursor; n=13; Deuterostomia|Rep: 28S ribosomal
protein S12, mitochondrial precursor - Homo sapiens
(Human)
Length = 138
Score = 35.5 bits (78), Expect = 0.81
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +3
Query: 129 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
K P G KG+VL + K+PNSA RKC RV+L GR+
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90
>UniRef50_Q11EN9 Cluster: Putative uncharacterized protein; n=1;
Mesorhizobium sp. BNC1|Rep: Putative uncharacterized
protein - Mesorhizobium sp. (strain BNC1)
Length = 338
Score = 33.9 bits (74), Expect = 2.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 256 LPFLMSCTRTHLRMAELGCLASTPTFSRTMPFA 158
LP + R+H ++ E+ C + P +S T+PFA
Sbjct: 239 LPTAFNSARSHNKILEIACFGAAPVYSSTVPFA 271
>UniRef50_O85884 Cluster: Putative uncharacterized protein orf433;
n=2; Novosphingobium aromaticivorans|Rep: Putative
uncharacterized protein orf433 - Sphingomonas
aromaticivorans
Length = 651
Score = 33.1 bits (72), Expect = 4.3
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -1
Query: 329 PATSIRRFLRCGLGNRHGGRMRSLSSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRC 150
P + +LR +GN HG +++ + + LN+L + F D R + + +T A +
Sbjct: 95 PVWAAHEYLRHHMGNLHGKKLKGIETALNDLANNTFNDLRPYIDTSFTGDSRSPAEIIAA 154
Query: 149 T 147
T
Sbjct: 155 T 155
>UniRef50_A0CUX9 Cluster: Chromosome undetermined scaffold_29, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_29,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 107
Score = 33.1 bits (72), Expect = 4.3
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 54 KHVNHRREQ--RWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 227
K H+R Q W K+F K + T+ + G H KG+++ K G + N + +
Sbjct: 26 KITKHKRVQGRAWRRKQFNKRKVQTQLQKTLVGQQIHLKGVLVHKKGPNWHKGNKQLLEK 85
Query: 228 VRVQLIKNGRK 260
+++L++ R+
Sbjct: 86 EKIELVQLKRE 96
>UniRef50_O70089 Cluster: 30S ribosomal protein S12; n=35; cellular
organisms|Rep: 30S ribosomal protein S12 - Aquifex
aeolicus
Length = 128
Score = 32.7 bits (71), Expect = 5.7
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 123 KWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNG 254
K KA G +G+ + V K+PNSA+RK RV+L NG
Sbjct: 18 KSKAPALQGCPQKRGVCVRVYTVTPKKPNSALRKVARVRL-SNG 60
>UniRef50_A4XF13 Cluster: Transcriptional regulator, LysR family;
n=1; Novosphingobium aromaticivorans DSM 12444|Rep:
Transcriptional regulator, LysR family - Novosphingobium
aromaticivorans (strain DSM 12444)
Length = 315
Score = 32.3 bits (70), Expect = 7.5
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +3
Query: 51 RKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 203
R+H + W EF A G W ANP G A+ A G+V + KQ
Sbjct: 193 RRHAGALQSLGWG-YEFDAALPGGPWSANPAGEAAQAAGLVTFNAWPQLKQ 242
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 559,014,351
Number of Sequences: 1657284
Number of extensions: 11117985
Number of successful extensions: 23645
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 22972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23644
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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