Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0860
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   133   1e-32
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   133   1e-32
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    30   0.19 
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   3.2  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   5.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   5.5  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    25   5.5  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   7.3  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   7.3  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   9.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.6  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  133 bits (322), Expect = 1e-32
 Identities = 59/80 (73%), Positives = 70/80 (87%)
 Frame = +3

Query: 21  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 200
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 201 QPNSAIRKCVRVQLIKNGRK 260
           QPNSAIRKCVRVQLIKNG+K
Sbjct: 61  QPNSAIRKCVRVQLIKNGKK 80



 Score = 48.8 bits (111), Expect = 5e-07
 Identities = 22/42 (52%), Positives = 27/42 (64%)
 Frame = +1

Query: 322 VAGFGRKGHAVGDIPGVRFKXXXXXXXXXXXXYKEKKERPRS 447
           ++GFGRKG A GDIPGVRFK            + EKKE+PR+
Sbjct: 102 LSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143



 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KKVTAFVP DGCLN ++ENDE
Sbjct: 79  KKVTAFVPHDGCLNFVDENDE 99


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  133 bits (322), Expect = 1e-32
 Identities = 59/80 (73%), Positives = 70/80 (87%)
 Frame = +3

Query: 21  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 200
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 201 QPNSAIRKCVRVQLIKNGRK 260
           QPNSAIRKCVRVQLIKNG+K
Sbjct: 61  QPNSAIRKCVRVQLIKNGKK 80



 Score = 48.8 bits (111), Expect = 5e-07
 Identities = 22/42 (52%), Positives = 27/42 (64%)
 Frame = +1

Query: 322 VAGFGRKGHAVGDIPGVRFKXXXXXXXXXXXXYKEKKERPRS 447
           ++GFGRKG A GDIPGVRFK            + EKKE+PR+
Sbjct: 102 LSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143



 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KKVTAFVP DGCLN ++ENDE
Sbjct: 79  KKVTAFVPHDGCLNFVDENDE 99


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 147 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           G+   +G+      V+ K+PNSA+RK  RV+L
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL 78


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 344 PLRPNPATSIRRFLRCGLGNRHGGRMRSLSSVLNELYTDAFA 219
           PLR      ++RFL     NR+   + S+  ++N LYTD F+
Sbjct: 794 PLRELSHYIVQRFLVQQDSNRYLHPLLSVMDLINLLYTDIFS 835


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 84  WADKEFKKAHMGTKWKANPFGGASHAKGIV 173
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -3

Query: 90  PPIAVHDGGSRAYAP 46
           PP AV  GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 444 SWSLLFLFVESEERXVGYXYHLKTNSGNVTD--GVTFTTESRH 322
           SW L+++ V S+E+  GY   L     N+ D  G+    ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 381 LKTNSGNVTDGVTFTTESRH*YSSFSSMWFRQPSR 277
           +K  +  VTD     T+S H Y   + M FR+  R
Sbjct: 670 IKALTSTVTDSTLVDTQSFHPYKVVTDMIFREDRR 704


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 543 CTQYLLCTRILHL*TYKQRASRQQVTYNNVH 451
           C QY      +H+   K+    QQ+TY  VH
Sbjct: 277 CLQYTNTDLEMHIWEEKETIYEQQMTYQKVH 307


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 143 ERVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYS 36
           E + LP R  +  L FF +PSL + + +++  ++ S
Sbjct: 200 EPLPLPARPQISDLSFFRKPSLPSALQNIVIEKNAS 235


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 281  DGCLNHIEENDEY*WR 328
            D C+ H+E N+E  W+
Sbjct: 1830 DSCVRHLENNEETDWK 1845


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,477
Number of Sequences: 5004
Number of extensions: 44170
Number of successful extensions: 82
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)