Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0860
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541...   132   2e-31
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347...   128   4e-30
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126...   116   1e-26
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746...    38   0.004
04_01_0440 + 5746474-5746662,5746895-5747251                           28   4.2  
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458...    28   5.6  

>01_06_1253 -
           35753546-35753686,35753759-35753885,35753970-35754125,
           35754761-35754853,35757132-35757265,35757339-35757465,
           35757550-35757705,35758321-35758325
          Length = 312

 Score =  132 bits (319), Expect = 2e-31
 Identities = 57/85 (67%), Positives = 69/85 (81%)
 Frame = +3

Query: 6   CRAIQMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKV 185
           C ++ MGK RG+   RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224

Query: 186 GVEAKQPNSAIRKCVRVQLIKNGRK 260
           G+EAKQPNSAIRKC RVQL+KNG+K
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKK 249



 Score =  128 bits (308), Expect = 4e-30
 Identities = 56/80 (70%), Positives = 66/80 (82%)
 Frame = +3

Query: 21  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 200
           MGK RG+   RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 201 QPNSAIRKCVRVQLIKNGRK 260
           QPNSAIRKC RVQL+KNG+K
Sbjct: 60  QPNSAIRKCARVQLVKNGKK 79



 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 27/42 (64%), Positives = 30/42 (71%)
 Frame = +1

Query: 322 VAGFGRKGHAVGDIPGVRFKXXXXXXXXXXXXYKEKKERPRS 447
           +AGFGRKGHAVGDIPGVRFK            +KEKKE+PRS
Sbjct: 271 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 25/40 (62%), Positives = 28/40 (70%)
 Frame = +1

Query: 322 VAGFGRKGHAVGDIPGVRFKXXXXXXXXXXXXYKEKKERP 441
           +AGFGRKGHAVGDIPGVRFK            +KEKKE+P
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KK+ AFVP DGCLN IEENDE
Sbjct: 78  KKIAAFVPNDGCLNFIEENDE 98



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KK+ AFVP DGCLN IEENDE
Sbjct: 248 KKIAAFVPNDGCLNFIEENDE 268


>03_06_0466 -
           34134138-34134278,34134355-34134481,34134558-34134713,
           34135831-34135835
          Length = 142

 Score =  128 bits (308), Expect = 4e-30
 Identities = 56/80 (70%), Positives = 66/80 (82%)
 Frame = +3

Query: 21  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 200
           MGK RG+   RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 201 QPNSAIRKCVRVQLIKNGRK 260
           QPNSAIRKC RVQL+KNG+K
Sbjct: 60  QPNSAIRKCARVQLVKNGKK 79



 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 27/42 (64%), Positives = 30/42 (71%)
 Frame = +1

Query: 322 VAGFGRKGHAVGDIPGVRFKXXXXXXXXXXXXYKEKKERPRS 447
           +AGFGRKGHAVGDIPGVRFK            +KEKKE+PRS
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KK+ AFVP DGCLN IEENDE
Sbjct: 78  KKIAAFVPNDGCLNFIEENDE 98


>10_06_0053 -
           10110617-10111271,10112023-10112417,10112565-10112650,
           10112973-10113021,10114164-10114290,10114372-10114526,
           10114730-10114948
          Length = 561

 Score =  116 bits (279), Expect = 1e-26
 Identities = 52/78 (66%), Positives = 61/78 (78%)
 Frame = +3

Query: 27  KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 206
           K  G+   RK   HRR QRWADK +KK+H G +WK  PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74  KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132

Query: 207 NSAIRKCVRVQLIKNGRK 260
           NSAI KC RVQL+KNG+K
Sbjct: 133 NSAICKCARVQLVKNGKK 150



 Score = 37.1 bits (82), Expect = 0.009
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEEND 313
           KK+ AFVP DGCLN I+EN+
Sbjct: 149 KKIAAFVPNDGCLNFIKENE 168


>05_03_0026 +
           7466017-7466034,7466340-7466405,7466572-7466833,
           7467254-7467294
          Length = 128

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +1

Query: 322 VAGFGRKGHAVGDIPGVRFK 381
           ++GFG KGHAVGDI GVRF+
Sbjct: 71  ISGFGHKGHAVGDIRGVRFE 90


>04_01_0440 + 5746474-5746662,5746895-5747251
          Length = 181

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 80  AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 178
           A+GG      P GY+ +G PF  C    KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159


>01_03_0200 +
           13744735-13745037,13745071-13745610,13745704-13745862,
           13748992-13749123,13749282-13749472,13749541-13749792,
           13750248-13750323,13750411-13750602,13750688-13750689,
           13753230-13753287,13753736-13754941
          Length = 1036

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -1

Query: 305 LRCGLGNR-HGGRMRSLSSVLN 243
           LR  LGNR HGGR+R +SS L+
Sbjct: 152 LRQALGNREHGGRVRGVSSKLS 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,632,968
Number of Sequences: 37544
Number of extensions: 332829
Number of successful extensions: 776
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)