Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0860
         (545 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S...   144   2e-34
CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.               144   2e-34
BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23 p...   144   2e-34
AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23 p...    59   9e-09
Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal p...    36   0.12 
CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.               36   0.12 
BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal...    36   0.12 
BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal...    36   0.12 
BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal...    36   0.12 
AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12 p...    36   0.12 
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.     30   6.1  
AK098732-1|BAC05396.1|  166|Homo sapiens protein ( Homo sapiens ...    29   8.0  

>D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S28
           homologue protein.
          Length = 143

 Score =  144 bits (349), Expect = 2e-34
 Identities = 66/80 (82%), Positives = 74/80 (92%)
 Frame = +3

Query: 21  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 200
           MGK RG+RTARK  +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1   MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60

Query: 201 QPNSAIRKCVRVQLIKNGRK 260
           QPNSAIRKCVRVQLIKNG+K
Sbjct: 61  QPNSAIRKCVRVQLIKNGKK 80



 Score = 60.9 bits (141), Expect = 3e-09
 Identities = 29/42 (69%), Positives = 29/42 (69%)
 Frame = +1

Query: 322 VAGFGRKGHAVGDIPGVRFKXXXXXXXXXXXXYKEKKERPRS 447
           VAGFGRKGHAVGDIPGVRFK            YK KKERPRS
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143



 Score = 44.4 bits (100), Expect = 3e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KK+TAFVP DGCLN IEENDE
Sbjct: 79  KKITAFVPNDGCLNFIEENDE 99


>CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.
          Length = 143

 Score =  144 bits (349), Expect = 2e-34
 Identities = 66/80 (82%), Positives = 74/80 (92%)
 Frame = +3

Query: 21  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 200
           MGK RG+RTARK  +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1   MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60

Query: 201 QPNSAIRKCVRVQLIKNGRK 260
           QPNSAIRKCVRVQLIKNG+K
Sbjct: 61  QPNSAIRKCVRVQLIKNGKK 80



 Score = 60.9 bits (141), Expect = 3e-09
 Identities = 29/42 (69%), Positives = 29/42 (69%)
 Frame = +1

Query: 322 VAGFGRKGHAVGDIPGVRFKXXXXXXXXXXXXYKEKKERPRS 447
           VAGFGRKGHAVGDIPGVRFK            YK KKERPRS
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143



 Score = 44.4 bits (100), Expect = 3e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KK+TAFVP DGCLN IEENDE
Sbjct: 79  KKITAFVPNDGCLNFIEENDE 99


>BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23
           protein.
          Length = 143

 Score =  144 bits (349), Expect = 2e-34
 Identities = 66/80 (82%), Positives = 74/80 (92%)
 Frame = +3

Query: 21  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 200
           MGK RG+RTARK  +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1   MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60

Query: 201 QPNSAIRKCVRVQLIKNGRK 260
           QPNSAIRKCVRVQLIKNG+K
Sbjct: 61  QPNSAIRKCVRVQLIKNGKK 80



 Score = 60.9 bits (141), Expect = 3e-09
 Identities = 29/42 (69%), Positives = 29/42 (69%)
 Frame = +1

Query: 322 VAGFGRKGHAVGDIPGVRFKXXXXXXXXXXXXYKEKKERPRS 447
           VAGFGRKGHAVGDIPGVRFK            YK KKERPRS
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143



 Score = 44.4 bits (100), Expect = 3e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KK+TAFVP DGCLN IEENDE
Sbjct: 79  KKITAFVPNDGCLNFIEENDE 99


>AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23
           protein.
          Length = 59

 Score = 59.3 bits (137), Expect = 9e-09
 Identities = 28/41 (68%), Positives = 28/41 (68%)
 Frame = +1

Query: 322 VAGFGRKGHAVGDIPGVRFKXXXXXXXXXXXXYKEKKERPR 444
           VAGFGRKGHAVGDIPGVRFK            YK KKERPR
Sbjct: 19  VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59



 Score = 35.5 bits (78), Expect = 0.12
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +2

Query: 269 FVPRDGCLNHIEENDE 316
           FVP DGCLN IEENDE
Sbjct: 1   FVPNDGCLNFIEENDE 16


>Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 precursor protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.12
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +3

Query: 129 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.12
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +3

Query: 129 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.12
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +3

Query: 129 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.12
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +3

Query: 129 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.12
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +3

Query: 129 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12
           protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.12
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +3

Query: 129 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
          Length = 1332

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 107 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPC 235
           SPHG +M G P          RP ES+C         PQ RPC
Sbjct: 37  SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78


>AK098732-1|BAC05396.1|  166|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25866 fis, clone CBR01987. ).
          Length = 166

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 338 RPNPATSIRRFLRC--GLGNRHGGRMRSLSS 252
           RP+P T +R+  RC  G G R G R RS S+
Sbjct: 88  RPHPGTGLRQTPRCTKGQGPRRGRRRRSASA 118


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,645,439
Number of Sequences: 237096
Number of extensions: 1725767
Number of successful extensions: 3540
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3540
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)