Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0859
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom...    36   0.008
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   2.1  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    26   6.5  
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.6  

>SPAC10F6.16 |mug134||endosulphine family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = +3

Query: 282 MLGRGPSGHSAFLQKRLAKGQKFFDSGDYQMAKQRPGNXXXXXXXXXXXXXXXTGDAIPT 461
           + GR P      +QK L +G+K+FDSGDY + K    +                G  IP+
Sbjct: 40  LYGRLPQRKDLLVQK-LQQGRKYFDSGDYALNKAGKAS---------DSGITCIGKEIPS 89

Query: 462 PETVPLRKTSIIQP 503
           P+T+P R  S   P
Sbjct: 90  PDTIPHRVVSAGSP 103


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 571 VNIEEHIIKNIYSLFTYWNV*CSLFSFYHLIK 666
           V+++E +  N+Y LFTY N    +F+ +  +K
Sbjct: 80  VDLDEWVALNVYELFTYLNHFYDVFATFCTVK 111


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +1

Query: 256 N*KRNSLMRCWVEGPVVILHFCKKD*PRDKNSLILATIKW 375
           N ++ + M+C  E P+  + +   + P + + L+L +I W
Sbjct: 33  NKRQLACMKCQCENPMAAITYADIEYPHNTHFLLLDSISW 72


>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 619 YWNV*CSLFSFYHLIKNKHR 678
           YW + C  + F ++IK +HR
Sbjct: 25  YWFIQCLRYCFIYIIKKQHR 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,414
Number of Sequences: 5004
Number of extensions: 49518
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)