Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0858
(749 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 155 8e-37
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 108 1e-22
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 89 8e-17
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 89 1e-16
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 85 2e-15
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 82 1e-14
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 82 1e-14
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 82 1e-14
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 80 5e-14
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 79 9e-14
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 77 4e-13
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 73 8e-12
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 71 2e-11
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 70 5e-11
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 68 3e-10
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 66 9e-10
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 65 2e-09
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 65 2e-09
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 63 8e-09
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 61 3e-08
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 60 4e-08
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 58 2e-07
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 55 2e-06
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 51 3e-05
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 41 0.037
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 40 0.086
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 39 0.15
UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillar... 37 0.46
UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2; Lactoc... 36 1.1
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 34 4.3
UniRef50_A7PGC1 Cluster: Chromosome chr6 scaffold_15, whole geno... 33 7.5
UniRef50_UPI000023DB34 Cluster: hypothetical protein FG02414.1; ... 33 9.9
UniRef50_Q7NID4 Cluster: Gll2249 protein; n=8; Cyanobacteria|Rep... 33 9.9
UniRef50_A1CF41 Cluster: Translation factor pelota, putative; n=... 33 9.9
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 33 9.9
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 155 bits (377), Expect = 8e-37
Identities = 75/90 (83%), Positives = 77/90 (85%)
Frame = +3
Query: 240 FLQIQMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQE 419
F + +MFHKKAKYKFIG LTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQE
Sbjct: 41 FSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQE 100
Query: 420 KIRASSGGRPFSKHVRRIRPNLKIGTVCIL 509
KIRASSGGRPFSKHVRRIRPNLKIGTVCIL
Sbjct: 101 KIRASSGGRPFSKHVRRIRPNLKIGTVCIL 130
Score = 141 bits (341), Expect = 2e-32
Identities = 65/65 (100%), Positives = 65/65 (100%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF
Sbjct: 131 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 190
Query: 689 NDDYF 703
NDDYF
Sbjct: 191 NDDYF 195
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/34 (64%), Positives = 25/34 (73%)
Frame = +1
Query: 193 STKKPRNYDLGNGVMRFSKSKCSTRRLNTSSLAK 294
STKKPRNYDLGNGVMRFSKSK ++ + K
Sbjct: 25 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGK 58
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 108 bits (260), Expect = 1e-22
Identities = 48/65 (73%), Positives = 56/65 (86%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
LAGRH GKRVVL+ +L SGLLLVTGPFA NSCPLRR+ QRYVIGTS+++ LG FK+P+H
Sbjct: 123 LAGRHQGKRVVLLKVLASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHL 182
Query: 689 NDDYF 703
ND YF
Sbjct: 183 NDAYF 187
Score = 62.5 bits (145), Expect = 1e-08
Identities = 37/104 (35%), Positives = 53/104 (50%)
Frame = +3
Query: 240 FLQIQMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQE 419
+ + QM+ ++A Y+ VK+IGG KNGG RTV LK+ K+ YPT+
Sbjct: 33 YSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERTVFLKKSKASYPTKT 92
Query: 420 KIRASSGGRPFSKHVRRIRPNLKIGTVCILSLVDMQARGLYLLE 551
++ FS+H R R NL GTV IL Q + + LL+
Sbjct: 93 FVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLK 136
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 89.4 bits (212), Expect = 8e-17
Identities = 40/65 (61%), Positives = 48/65 (73%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
LAG H GKRV+ + L SGLLLVTGPF +N PLRR+ Q YVI TSTRI + F +PKH
Sbjct: 100 LAGPHKGKRVIFLKALKSGLLLVTGPFKYNGVPLRRVNQCYVIATSTRIDISKFDVPKHI 159
Query: 689 NDDYF 703
+D+YF
Sbjct: 160 DDEYF 164
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 88.6 bits (210), Expect = 1e-16
Identities = 40/65 (61%), Positives = 47/65 (72%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
LAGRH KRVV + L SGLLLVTGPF +N PLRR+ QRYVI T TRI + N K+P
Sbjct: 106 LAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQRYVIATKTRIKIKNIKIPSQL 165
Query: 689 NDDYF 703
ND++F
Sbjct: 166 NDEFF 170
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 84.6 bits (200), Expect = 2e-15
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
L GRH GKRVV + L SGLLLVTGP N PLRR Q++VI TST+I + N K+PKH
Sbjct: 153 LTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHL 212
Query: 689 NDDYF 703
D YF
Sbjct: 213 TDAYF 217
Score = 65.3 bits (152), Expect = 2e-09
Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Frame = +3
Query: 324 LTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIR--ASSGGRPFSKHVRRIRPNLKIGT 497
L V K +GG+KNGGTR V L++ +YPT++ R S G +PFS+HVR++R ++ GT
Sbjct: 89 LATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGT 148
Query: 498 VCIL 509
+ I+
Sbjct: 149 ILII 152
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 82.2 bits (194), Expect = 1e-14
Identities = 43/67 (64%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH- 685
LAG H GKRVV + L SGLLLVTGPF N PLRRIPQ YVI TST I + + KLP+H
Sbjct: 109 LAGAHRGKRVVFLKQLNSGLLLVTGPFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHA 168
Query: 686 FNDD-YF 703
F D+ YF
Sbjct: 169 FADESYF 175
Score = 46.4 bits (105), Expect = 8e-04
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = +3
Query: 339 KQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCIL 509
K IGG+KNGG R VP++R +YPT E +R R + ++R ++ GTV IL
Sbjct: 54 KDIGGDKNGGKRVVPVQRESRYYPT-EDVRRRLANRK-KPGMAKLRSSITPGTVLIL 108
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 82.2 bits (194), Expect = 1e-14
Identities = 39/65 (60%), Positives = 47/65 (72%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
LAG + GKRVVL+ L SGLLLV+GP N PLRR+ Q+ VI TSTRI + N K+P+H
Sbjct: 104 LAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVHQKLVIATSTRIDISNVKVPEHI 163
Query: 689 NDDYF 703
ND YF
Sbjct: 164 NDTYF 168
Score = 46.8 bits (106), Expect = 6e-04
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +3
Query: 330 VVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCIL 509
V+ K+IGG+KNGGTR V ++ FYP + + +K+ +IR +L+ GT+ IL
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILIL 103
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 82.2 bits (194), Expect = 1e-14
Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH 685
LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS ++++ K+P+H
Sbjct: 80 LAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEH 139
Query: 686 FNDDYF 703
ND+YF
Sbjct: 140 INDEYF 145
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 80.2 bits (189), Expect = 5e-14
Identities = 39/65 (60%), Positives = 46/65 (70%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
LAGR AGKRVV + L SGL+L+TGPF N PLRRI QRYVI TST+I + + K+
Sbjct: 100 LAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATI 159
Query: 689 NDDYF 703
ND YF
Sbjct: 160 NDAYF 164
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 79.4 bits (187), Expect = 9e-14
Identities = 38/65 (58%), Positives = 45/65 (69%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
LAG H GKRVV + L +GLL VTGP+ N CPLRRI Q YVI TST++ L KLP+
Sbjct: 129 LAGPHRGKRVVFLKQLKTGLLPVTGPYGVNGCPLRRINQIYVIATSTKLDLSKVKLPEGL 188
Query: 689 NDDYF 703
+D YF
Sbjct: 189 DDRYF 193
Score = 54.8 bits (126), Expect = 2e-06
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Frame = +3
Query: 240 FLQIQMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQE 419
F + +MFHK+ +K V VK++ GEKNGG R +PLK+ + YPT++
Sbjct: 37 FSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLPLKKERRSYPTED 96
Query: 420 --KIRASSGGRPFSKHVRRIRPNLKIGTVCIL 509
+ + +S +P S+ +R + GTV IL
Sbjct: 97 SPQHKRTSHMKPSSRTRVALRKRITPGTVLIL 128
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 77.4 bits (182), Expect = 4e-13
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
LAGR GKRVV + L SGLLLVTGPF N PLRR+ Q YVIGTST++ + L K F
Sbjct: 98 LAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-F 156
Query: 689 NDDYF 703
+D YF
Sbjct: 157 DDKYF 161
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 72.9 bits (171), Expect = 8e-12
Identities = 36/65 (55%), Positives = 44/65 (67%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
LAGR GKRVV + L SGLLLVTGPF N P+RR+ Q YVI TST++ + + K F
Sbjct: 87 LAGRFMGKRVVFLKQLKSGLLLVTGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-F 145
Query: 689 NDDYF 703
+D YF
Sbjct: 146 DDKYF 150
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 71.3 bits (167), Expect = 2e-11
Identities = 32/65 (49%), Positives = 46/65 (70%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
LAG + GKRVV++ LPSGL++VTGP+A N P+RR+ Y+I TST++ + + K F
Sbjct: 48 LAGPYKGKRVVMLKALPSGLVVVTGPYALNGVPVRRVNPAYIIATSTKVDVSKADVSK-F 106
Query: 689 NDDYF 703
D+YF
Sbjct: 107 TDEYF 111
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 70.1 bits (164), Expect = 5e-11
Identities = 32/49 (65%), Positives = 38/49 (77%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRI 655
L G + GKRVVL+ +L SGLLLVTGPF+FN PLRR+ RYVI TST +
Sbjct: 53 LTGSYKGKRVVLLKVLKSGLLLVTGPFSFNGVPLRRVNSRYVIATSTNV 101
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 67.7 bits (158), Expect = 3e-10
Identities = 34/65 (52%), Positives = 41/65 (63%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
L+GR GKRVV + L SGLLLVTGPF N PL+R+ YVI TST++ +
Sbjct: 67 LSGRFQGKRVVFLKQLKSGLLLVTGPFKINGVPLKRVNSAYVIPTSTKVDVTGVN-ANQI 125
Query: 689 NDDYF 703
NDDYF
Sbjct: 126 NDDYF 130
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 66.1 bits (154), Expect = 9e-10
Identities = 34/65 (52%), Positives = 39/65 (60%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
L GRH GKRVV + L SGLLLVTGP A N PL R+ Q VI T T++ + K KH
Sbjct: 18 LTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTKVDICKVKTSKHL 77
Query: 689 NDDYF 703
D F
Sbjct: 78 TDASF 82
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 65.3 bits (152), Expect = 2e-09
Identities = 33/65 (50%), Positives = 42/65 (64%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
LAGR GKRVV + L LL++GPF N PLRR+ RYVI TST++S+ + K F
Sbjct: 43 LAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEK-F 101
Query: 689 NDDYF 703
N +YF
Sbjct: 102 NVEYF 106
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/51 (60%), Positives = 36/51 (70%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 661
LAGR GKRVVL+ L G+LLVTGPF N PLRR+ RYVI TS ++ L
Sbjct: 48 LAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRRVNARYVIATSQKVDL 98
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 62.9 bits (146), Expect = 8e-09
Identities = 30/51 (58%), Positives = 36/51 (70%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 661
LAGR GKRV+L+ L G+LLVTGPF N PLRR+ RYVI TS+ + L
Sbjct: 67 LAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVPLRRVNARYVIATSSTVDL 117
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 60.9 bits (141), Expect = 3e-08
Identities = 33/65 (50%), Positives = 41/65 (63%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 688
LAG G RVV++ L SG LLVTGP+A N PL R+ QRYVI TST I + + K
Sbjct: 81 LAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDVSKVDV-KKI 139
Query: 689 NDDYF 703
++ YF
Sbjct: 140 DNAYF 144
Score = 46.0 bits (104), Expect = 0.001
Identities = 23/62 (37%), Positives = 35/62 (56%)
Frame = +3
Query: 324 LTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVC 503
+ ++ K IGG KNGG R VP K+ +YP +K + R ++RP++K GT+
Sbjct: 20 IKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDK-KTPVPSRKNVHKPTKLRPSIKSGTIV 78
Query: 504 IL 509
IL
Sbjct: 79 IL 80
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 60.5 bits (140), Expect = 4e-08
Identities = 30/58 (51%), Positives = 38/58 (65%)
Frame = +2
Query: 530 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 703
KRVV + L SGLLL+TG F N PLRR+ Q YVI TST++ + + K F+D YF
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQAYVIATSTKVDIPKVNVEK-FDDKYF 212
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 58.0 bits (134), Expect = 2e-07
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRI 655
L G+H GKR ++ +L SGLL V GP+ N PL+R+ RY+I TST I
Sbjct: 83 LTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIVTSTNI 131
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 55.2 bits (127), Expect = 2e-06
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGN 667
LAGR G+R V++ LP +G L+V+GP +N P+RRI RYVI TST + + +
Sbjct: 42 LAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATSTTVDISS 95
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 51.2 bits (117), Expect = 3e-05
Identities = 21/46 (45%), Positives = 29/46 (63%)
Frame = +2
Query: 566 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 703
L GPF+ N P+RRI Q++V+ TST+I + K+P DDYF
Sbjct: 10 LFTFLGPFSINGVPVRRIAQKFVLPTSTKIDVSGVKIPATMTDDYF 55
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 40.7 bits (91), Expect = 0.037
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 661
L G A +RVV + L + L GP + N PL RI +RY++ TST + L
Sbjct: 36 LEGVFASRRVVYLKGLEDNIALCAGPKSINGIPLFRIDERYLLATSTVLDL 86
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 39.5 bits (88), Expect = 0.086
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +2
Query: 443 PSIQQACTQDP--TQPEDR--NCLHSLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPL 610
P ++ AC P T+P + + + G H GKR V+V +G++ + GP P+
Sbjct: 39 PLVKPACAAKPVETRPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGPVV----PV 94
Query: 611 RRIPQRYVIGTSTRISL 661
I Q Y+I TST I +
Sbjct: 95 NEISQDYLIATSTSIEV 111
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 38.7 bits (86), Expect = 0.15
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +2
Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRIS 658
+ G+H +RVV + L G LL+TGP A N L R Q+ V+ TST I+
Sbjct: 143 ITGQH--RRVVFLKQLSRGFLLITGPLALNLVLLYRTHQKSVVITSTTIN 190
>UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillardia
theta|Rep: 60S ribosomal protein L6B - Guillardia theta
(Cryptomonas phi)
Length = 169
Score = 37.1 bits (82), Expect = 0.46
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = +2
Query: 527 GKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 700
GK+ V +G G LL++G FN +I +YV+ + + NF L KH N DY
Sbjct: 57 GKKCVFLGHTDDGNLLLSGIMKFNGIGYLKIHWKYVVKSGVSLKGLNF-LTKHTNKDY 113
>UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2;
Lactococcus lactis subsp. cremoris|Rep:
Cation-transporting ATPase - Lactococcus lactis subsp.
cremoris (strain MG1363)
Length = 841
Score = 35.9 bits (79), Expect = 1.1
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +2
Query: 533 RVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR--YVIGTSTRIS 658
+++++GI+P +L++ F F+S L IPQR +IGT+ I+
Sbjct: 215 KIIVIGIIPISILVLLNQFVFSSLDLSVIPQRKTAIIGTAATIT 258
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 33.9 bits (74), Expect = 4.3
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +3
Query: 357 KNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 488
K R LK SF P + + ASS GRP K +R+R LK
Sbjct: 128 KEDHNREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_A7PGC1 Cluster: Chromosome chr6 scaffold_15, whole genome
shotgun sequence; n=17; Vitis vinifera|Rep: Chromosome
chr6 scaffold_15, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 376
Score = 33.1 bits (72), Expect = 7.5
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 476 TQPEDRNCLHSLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR--YVIGTST 649
T P N +H+L+ + + +L LP + + N PL+ + QR +++
Sbjct: 48 THPAQSNIVHTLSRGASSRHYILRKELPPSMFFIDALLRHNIFPLQHLVQRRGFLLEALF 107
Query: 650 RISLGNFKLPKH 685
RIS G F P H
Sbjct: 108 RISEGYFFGPHH 119
>UniRef50_UPI000023DB34 Cluster: hypothetical protein FG02414.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG02414.1 - Gibberella zeae PH-1
Length = 607
Score = 32.7 bits (71), Expect = 9.9
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +3
Query: 384 LKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILSLVDMQARGLYLLE 551
L+ R +F P+Q KI + F++HV R+R NL+I I SL+ G L +
Sbjct: 431 LESRDAF-PSQIKIPCKAELASFTRHVERVRKNLEIRVTQIESLIAWLNEGKVLFD 485
>UniRef50_Q7NID4 Cluster: Gll2249 protein; n=8; Cyanobacteria|Rep:
Gll2249 protein - Gloeobacter violaceus
Length = 544
Score = 32.7 bits (71), Expect = 9.9
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +2
Query: 530 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDD 697
+ +V G + GL+L F S PL Q + +G +T +G LP+HFNDD
Sbjct: 41 QEIVTCGQVLKGLIL--NGLGFVSAPLYLFEQ-FFVGKATEHLIGPGVLPEHFNDD 93
>UniRef50_A1CF41 Cluster: Translation factor pelota, putative; n=7;
Pezizomycotina|Rep: Translation factor pelota, putative
- Aspergillus clavatus
Length = 410
Score = 32.7 bits (71), Expect = 9.9
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 373 EQYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGS 474
++Y +V S +TP ++ +P LV VHSAS Y S
Sbjct: 239 QKYIQSVASTTTPALKRLLPSLVVVHSASGYLHS 272
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 32.7 bits (71), Expect = 9.9
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 515 GRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 661
GR AG++ V+V I+ +++TGP RR+ ++ T +I +
Sbjct: 16 GREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,141,285
Number of Sequences: 1657284
Number of extensions: 14598387
Number of successful extensions: 34590
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 33546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34579
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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