Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0858
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    52   1e-07
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    27   2.9  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     26   5.0  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   6.6  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +2

Query: 509 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTST-RISLGNFKLPKH 685
           LAGR  GKRVV++  L    L+VTGP+  N  P+RR+  RYVI TS  +I +    + K 
Sbjct: 61  LAGRFRGKRVVVLSQLED-TLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEK- 118

Query: 686 FNDDYF 703
           F   YF
Sbjct: 119 FTKAYF 124



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +3

Query: 342 QIGGEKNGGTRTV-PL-KRRKSFYPT-QEKI--RASSGGRPFSKHVRRIRPNLKIGTVCI 506
           ++ G KNGG R V P  +    +YP  +E +  +A    RP      ++R +L  GTVCI
Sbjct: 5   KVNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKARKAVRP-----TKLRASLAPGTVCI 59

Query: 507 L 509
           L
Sbjct: 60  L 60


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 533 SCLHVYQRENANSSYLQVGSDPAYMLAEWTATR*GTD 423
           SC    Q     SS L + +DPA+ L++   T+ G D
Sbjct: 36  SCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTKFGKD 72


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = -1

Query: 623 EEYGVAGTN*MQKVQ*LKADRWAEFQQVQPSCLHVYQRENANSSYLQVGS 474
           +E G+  T   + +  +   +W + ++VQ +   + +RE  N+  L+VG+
Sbjct: 304 KELGIKHTPNSKIINQISLQQWVKQKKVQDAWRTIAEREKLNAHALEVGT 353


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = +1

Query: 379 YPSNVGSPST-----PLRRKSVPHLVAVHSASMY 465
           Y SNV SPS      P R  ++  L+ VHS  MY
Sbjct: 96  YVSNVPSPSDVFLRIPAREATLEELLQVHSQEMY 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,549
Number of Sequences: 5004
Number of extensions: 59869
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)