Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0858
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    82   4e-16
U88314-10|AAP68949.1|  344|Caenorhabditis elegans Hypothetical p...    28   8.1  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
 Frame = +2

Query: 509 LAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH 685
           LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q +VI TS ++++   K+P+H
Sbjct: 80  LAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEH 139

Query: 686 FNDDYF 703
            ND+YF
Sbjct: 140 INDEYF 145


>U88314-10|AAP68949.1|  344|Caenorhabditis elegans Hypothetical
           protein C46H11.10a protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 189 FLSHRTCRCGSRLGRRFRLCWSHHLFEGSTM 97
           FL   TCR  S +  RFR  +  HL EG  +
Sbjct: 41  FLQWSTCRALSEVNLRFRSHFKQHLKEGQAL 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,711,968
Number of Sequences: 27780
Number of extensions: 350163
Number of successful extensions: 860
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)