Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0857
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 31 0.22
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 27 2.7
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 3.6
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 26 4.7
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.2
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 6.2
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 26 6.2
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 25 8.2
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 25 8.2
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 8.2
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 30.7 bits (66), Expect = 0.22
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 176 QRDSKLRQWIWRQQFVGQEVLRSTSGTVI 262
+ DS R W W+ + +GQ VL ++ GT +
Sbjct: 419 KNDSSARTWNWKSKTLGQHVLPTSDGTSV 447
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 410 KVECVGDDIAWMKFDKDGVLRAINSENG 493
K+E D +A + F+ DG + A S+NG
Sbjct: 183 KIEAHKDSLACLAFNSDGTMLATASDNG 210
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 556 KNTVFTNVAETPEGGVWWEGMGPAPERLVDWKGQPWD 666
K+ +F +A + WW+ + P+PE+ W D
Sbjct: 400 KDEIFKQIAFSVVEKAWWKMLLPSPEQWNSWPSSSRD 436
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 651 FPVDEAFRSWSHAFPPHPT-LRCFRHVSEHGVFEHRRHCYRIRSG 520
FP E SWSH P H T + H + + C+ +R G
Sbjct: 116 FPPKEDIYSWSHHTPLHKTKVILLGQDPYHNIGQAHGLCFSVRPG 160
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 508 TGTSAATNPIAMATVFKNTVFTNVAETPE 594
TG ++ +P V KN+V +VAE PE
Sbjct: 80 TGDASTQSPETSENVVKNSVDESVAEKPE 108
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 717 RGAESGIWMCSRSFLAGVPGLTFPVDEAFRSWS 619
R ESG S++ + GV L F D+ R W+
Sbjct: 175 RFLESGFLRLSKNLVPGVISLLFSRDDELRRWA 207
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 599 GCGGKAWDQLRNASSTGKVNPGTP 670
G G W L++ TGK N G P
Sbjct: 216 GYGATVWSPLKSGILTGKYNDGIP 239
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 652 LSSRRGVPELVPCLPTTP 599
LSSRR VP L+ L T+P
Sbjct: 360 LSSRRSVPNLISSLGTSP 377
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 317 PQGKKRYIAAAFPSACGKTNLA-MMTPTLPGYKVECVGDDIAWMKFDKDGVLRAINSENG 493
P K R+I A PS GKT++A ++ L V + D + + + RA N++
Sbjct: 17 PWRKVRFIGIAGPSGSGKTSVAQLIVKALNLPHVVILSLDSFYKSLNAEQKKRAFNNDYD 76
Query: 494 F 496
F
Sbjct: 77 F 77
>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 523 RLTYLCNSKEPVFRVDGPQYAVLVELH-PGYVVPHALYFV 407
+++YL +S + + V QYAV+V PG +V L+F+
Sbjct: 117 KISYLSSSGDGIGLVCNDQYAVVVPFTLPGDIVKAKLHFL 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,274,194
Number of Sequences: 5004
Number of extensions: 71457
Number of successful extensions: 201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -