Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0857
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0098 - 1193184-1193703,1193814-1193872 30 1.6
08_02_0773 + 21043553-21043813,21044775-21045203 30 1.6
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 30 2.1
01_03_0206 - 13783169-13783651,13783761-13783903,13783962-137841... 29 2.8
10_08_0303 - 16638379-16640199 29 4.9
01_06_0751 + 31690411-31690443,31692900-31694240 29 4.9
05_04_0053 + 17520202-17520984 28 6.5
02_02_0700 + 13058446-13058790,13059352-13059582,13060083-130602... 28 8.6
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 8.6
>10_01_0098 - 1193184-1193703,1193814-1193872
Length = 192
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 452 DKDGVLRAINSENGFFGIAQVRQ-PLRIR*QWR 547
D D R I SENG A++RQ P +IR WR
Sbjct: 158 DLDAEKRTIASENGPLSAARIRQLPAKIRFHWR 190
>08_02_0773 + 21043553-21043813,21044775-21045203
Length = 229
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 663 PGLTFPVDEAFRSWSHAFPPHPTLRCFRHVSEHGVFE 553
P L P ++ R W+H + H T EHG FE
Sbjct: 100 PTLACPSNDGIRFWAHEWEKHGTCAAAALGDEHGYFE 136
>03_02_0740 - 10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +1
Query: 583 ETPEGGVWWEG-MGPAPERLVDWKGQPWD----PSKKTPAAHPNS 702
E EGG WWEG + + +D+ PW+ K + HP+S
Sbjct: 1176 ELEEGGSWWEGRVSAVKPKSLDFPESPWEKYVIQYKNDGSDHPHS 1220
>01_03_0206 -
13783169-13783651,13783761-13783903,13783962-13784128,
13784641-13785149,13786031-13786312,13786397-13786792,
13787232-13787504
Length = 750
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 542 WRRCSKTPCSLTWRKHLRVGCGGKAWDQLRNASSTG 649
WRR ++TP ++ W + + +W + NASS G
Sbjct: 493 WRRGAETPIAVKWEDRI-IEIREGSWSYIANASSVG 527
>10_08_0303 - 16638379-16640199
Length = 606
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 26 ASHD*NWSEGSRYSTSRRAVCSLSSRSRIRWHS--GLALRPSEHRRTPQAG*QRDSK 190
+SH + G+ Y++SRR C+ R++ R ++ + + S+ R P QR K
Sbjct: 531 SSHGLQRASGTTYNSSRRKQCARKERAKERLYATPAMGMMVSKSRDEPPPAAQRQQK 587
>01_06_0751 + 31690411-31690443,31692900-31694240
Length = 457
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 105 VGSGGTPGWPCDPQNIVVLHKPANN 179
+ S G PGWP Q + H P N+
Sbjct: 326 ISSAGVPGWPDHSQRMQAWHAPENS 350
>05_04_0053 + 17520202-17520984
Length = 260
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -2
Query: 230 LAQQTVAAISTAVAYYLVVSRLVEYDDVLRVAGPARS 120
++ T AA++T V+Y +V R+V V V+GP RS
Sbjct: 183 VSPDTAAALATDVSYGVVALRVVVLGRVRFVSGPFRS 219
>02_02_0700 +
13058446-13058790,13059352-13059582,13060083-13060241,
13060483-13060635,13061619-13061702,13061847-13061915,
13062374-13062421,13062487-13062621
Length = 407
Score = 27.9 bits (59), Expect = 8.6
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = -1
Query: 288 SASHPSRRAITVPDV-ERSTSCPTNCCRHIHCRSLLSRC*PACGVRRCSE-GRRASPECH 115
SA+ P + D + +C T+ H+H SLLS C C E G A +
Sbjct: 321 SAADPMSEDCSAEDTFDAIVTCGTSVLLHMHIYSLLSFCSINTIAAICQEAGMHAVRKNR 380
Query: 114 RIRLREDNEQTARLDVEYLEPSLQF 40
+ L +D E+ R +V+ E F
Sbjct: 381 YVILPKDFEKGYRTNVKKPETDFDF 405
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -1
Query: 243 ERSTSCPTNCCRHIHCRSLLSRC*PACGVR-RCSEGRRASPECHR 112
+R +C + CR C + C C R RC + SP CHR
Sbjct: 417 QRLRNCGRHACRRRCCEGDCAPCPEVCDKRLRCGNHKCLSP-CHR 460
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,878,828
Number of Sequences: 37544
Number of extensions: 590309
Number of successful extensions: 1975
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1974
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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