Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0856
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85 hy...    28   5.4  
At2g19410.1 68415.m02264 protein kinase family protein contains ...    27   7.1  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   9.4  

>At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85
           hypothetical protein F9F8.14 - Arabidopsis thaliana,
           EMBL:AC009991
          Length = 355

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 436 LTELLYTDHFTEFQAHCWRFSCH 368
           L E  Y + F E+Q HC R+S H
Sbjct: 333 LEERGYAEKFMEYQMHCLRWSLH 355


>At2g19410.1 68415.m02264 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 801

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 78  LNCFD*KDKEITKVPSRTTPVSYRIHSIDHSPHIANGRLVPTRRPDHLYCPIYRELV 248
           L C + + ++   + S   PV  R+    +S     G  +  R P H +CPI RE++
Sbjct: 684 LKCAEFRCRDRPDLKSEVIPVLKRLVETANSKVKKEGSNL--RAPSHYFCPILREIM 738


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 195 VPTRRPDHLYCPIYRELV 248
           VP R P H  CPI++E++
Sbjct: 731 VPRRPPSHYLCPIFQEVM 748


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,752,154
Number of Sequences: 28952
Number of extensions: 211828
Number of successful extensions: 465
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)