Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0855
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    74   1e-15
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.3  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    23   3.1  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    23   3.1  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   3.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   5.4  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    21   9.5  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   9.5  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 73.7 bits (173), Expect = 1e-15
 Identities = 35/84 (41%), Positives = 49/84 (58%)
 Frame = +3

Query: 3   LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
           ++++PTRELA QI      F + S V+   ++GG     Q   +  G  I++ATPGRL D
Sbjct: 239 VIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVATPGRLKD 298

Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
           F+ +G  +     Y VLDEADRML
Sbjct: 299 FVNRGNVSFNSLKYFVLDEADRML 322



 Score = 48.0 bits (109), Expect = 7e-08
 Identities = 35/117 (29%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
 Frame = +2

Query: 182 FLGKGHNQLTAVHIFSS**G*SYVDMGFEPQIRKIIE-QIRP---DRQTLMWSATWPKEV 349
           F+ +G+    ++  F        +DMGF   + +++  Q  P   +RQTLM+SAT+P+EV
Sbjct: 299 FVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTLMFSATFPEEV 358

Query: 350 KKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSKNLV 520
           ++LA  +L +YI I +G +  SA  ++ Q      + +K +KL  +L++    + L+
Sbjct: 359 QQLAGKFLLNYIFIAVGIVG-SACTDVEQKFFQVSKFDKRSKLVSILEKAPNERTLI 414



 Score = 46.4 bits (105), Expect = 2e-07
 Identities = 21/57 (36%), Positives = 33/57 (57%)
 Frame = +1

Query: 514 PGAKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
           P  +T+IFVETKR A+ ++  +      +  + GD+ Q ER++ L  FK G   +LV
Sbjct: 408 PNERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTGHRKVLV 464


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 301 AYLLNDFSDLWFKSHINIRSASSR 230
           ++L+NDF  +W      +R+ +SR
Sbjct: 488 SFLVNDFGFIWLVLSSTVRAYASR 511


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +2

Query: 278  RKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 457
            R++    +PD   +        E K     +LG   Q + G L+ S N  + + + IC  
Sbjct: 1035 REVTVVPKPDPNAVQKIEEKKPEKKDKVLTFLGANAQDDEGGLEFSVN-KLFKCM-IC-T 1091

Query: 458  HEKENKLNVLLQEIGQS-KNLVRK 526
            ++ +NK N  L++I +S ++L RK
Sbjct: 1092 YKADNKENEQLRKIQESLRDLNRK 1115


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +2

Query: 278  RKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 457
            R++    +PD   +        E K     +LG   Q + G L+ S N  + + + IC  
Sbjct: 1035 REVTVVPKPDPNAVQKIEEKKPEKKDKVLTFLGANAQDDEGGLEFSVN-KLFKCM-IC-T 1091

Query: 458  HEKENKLNVLLQEIGQS-KNLVRK 526
            ++ +NK N  L++I +S ++L RK
Sbjct: 1092 YKADNKENEQLRKIQESLRDLNRK 1115


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 532 IFVETKRKAENISRNIRRYGWPAVC 606
           IFV+++     I  N+    W AVC
Sbjct: 221 IFVKSRPSPATIISNVTVISWQAVC 245


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 532 IFVETKRKAENISRNIRRYGWPAVC 606
           IFV+++     I  N+    W AVC
Sbjct: 221 IFVKSRPSPATIISNVTVISWQAVC 245


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 532 IFVETKRKAENISRNIRRYGWPAVC 606
           IFV+++     I  N+    W AVC
Sbjct: 541 IFVKSRPSPATIISNVTVISWQAVC 565


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 524 FAPGSYFVQFLAII 483
           + P  YF+Q LAI+
Sbjct: 322 YNPADYFIQLLAIV 335


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 524 FAPGSYFVQFLAII 483
           + P  YF+Q LAI+
Sbjct: 322 YNPADYFIQLLAIV 335


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -1

Query: 551 LLVSTKIIVFAPGSYFVQFLAIIHLIYFLFHVLDKYLQFEECCDLRKVVMILY 393
           L+V+T  I+    +  +QF A+ HL+   +  +  +       DLR+     Y
Sbjct: 22  LVVATGNIIHTTSNKQLQFFAVEHLLIQCYIAVSIFGSSSFEADLRQFYKTAY 74


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 628 VEFYRQACKQLASHI 584
           +E Y QAC +  +H+
Sbjct: 162 LEKYEQACNEFTTHV 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,113
Number of Sequences: 336
Number of extensions: 3791
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)