Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0855
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 122 6e-29
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 93 3e-20
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 88 1e-18
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 85 7e-18
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 75 1e-14
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 71 2e-13
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 69 5e-13
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 68 1e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 67 3e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 64 2e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 63 3e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 61 2e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 60 2e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 60 3e-10
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 60 4e-10
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 53 4e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 50 2e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 50 3e-07
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 50 4e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 48 1e-06
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 46 5e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 43 4e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 39 8e-04
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 30 0.36
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 2.5
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 4.4
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 26 5.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 5.9
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 26 5.9
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 26 5.9
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 122 bits (293), Expect = 6e-29
Identities = 59/84 (70%), Positives = 66/84 (78%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LVLAPTRELA QIQQ FG +S +RNTCV+GG P+ Q RDL RGVEI IATPGRL+D
Sbjct: 199 LVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLD 258
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
L+ TNL+R TYLVLDEADRML
Sbjct: 259 MLDSNKTNLRRVTYLVLDEADRML 282
Score = 119 bits (286), Expect = 5e-28
Identities = 51/83 (61%), Positives = 69/83 (83%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNI 430
+DMGFEPQIRKI++QIRPDRQT+M+SATWPKEV++LA DYL DYIQ+ +GSL L+A+HNI
Sbjct: 282 LDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNI 341
Query: 431 LQIVDICQEHEKENKLNVLLQEI 499
QIV++ +K +L ++E+
Sbjct: 342 KQIVEVVDNADKRARLGKDIEEV 364
Score = 61.7 bits (143), Expect = 1e-10
Identities = 27/54 (50%), Positives = 40/54 (74%)
Frame = +1
Query: 523 KTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
K +IF TKR A++I+R +R+ GWPA+ + GDK Q ERD VL +F+ G++ I+V
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMV 424
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 93.5 bits (222), Expect = 3e-20
Identities = 46/86 (53%), Positives = 57/86 (66%), Gaps = 3/86 (3%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
+++ PTRELA QI + F +R C +GGAP ++Q DL+RG EIV+ TPGR+ID
Sbjct: 495 IIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMID 554
Query: 183 FLEKG---TTNLQRCTYLVLDEADRM 251
L TNL RCTYLVLDEADRM
Sbjct: 555 VLSANAGRVTNLHRCTYLVLDEADRM 580
Score = 69.7 bits (163), Expect = 4e-13
Identities = 36/90 (40%), Positives = 59/90 (65%)
Frame = +2
Query: 254 DMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNIL 433
D+GFEPQ+ +II IRPDRQT+++SAT+P+ ++ LA L ++I +G + A+ +
Sbjct: 582 DLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVAS-EVE 640
Query: 434 QIVDICQEHEKENKLNVLLQEIGQSKNLVR 523
QIV++ E K ++L LL E+ ++ VR
Sbjct: 641 QIVEVRPEESKFSRLLELLGELYNNQLDVR 670
Score = 35.1 bits (77), Expect = 0.010
Identities = 13/54 (24%), Positives = 31/54 (57%)
Frame = +1
Query: 523 KTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
+T++FV+ + A+ + ++ + G+ + + G K Q +RD + +K G +L+
Sbjct: 670 RTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLI 723
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 88.2 bits (209), Expect = 1e-18
Identities = 41/84 (48%), Positives = 59/84 (70%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
L+LAPTREL QI + + F + S+VR V+GGA R Q R +++G +++ ATPGRL+D
Sbjct: 259 LILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVD 318
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
+++G +L +LVLDEADRML
Sbjct: 319 LIDRGRISLANIKFLVLDEADRML 342
Score = 65.7 bits (153), Expect = 6e-12
Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIR----PDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSA 418
+DMGFEPQIR I+E +RQTLM+SAT+P++++ LA D+L DY+ +++G + S
Sbjct: 342 LDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVG-ST 400
Query: 419 NHNILQIVDICQEHEKENKLNVLLQEI 499
+ NI Q V ++ EK + L +L +
Sbjct: 401 SENITQKVVHVEDSEKRSYLLDILHTL 427
Score = 54.8 bits (126), Expect = 1e-08
Identities = 25/57 (43%), Positives = 37/57 (64%)
Frame = +1
Query: 514 PGAKTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
P T+IFVETKR A+ ++ + +PA + GD+TQ+ER+ L F+ GR SI+V
Sbjct: 429 PEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMV 485
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 85.4 bits (202), Expect = 7e-18
Identities = 47/97 (48%), Positives = 57/97 (58%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
+VLAPTRELAQQIQ F R V GG EQ+ + +G IV+ATPGRL+D
Sbjct: 329 VVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLD 388
Query: 183 FLEKGTTNLQRCTYLVLDEADRMLIWDLNHKSEKSLS 293
LE+ L +CTY+V+DEADRML K LS
Sbjct: 389 CLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILS 425
Score = 46.8 bits (106), Expect = 3e-06
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +1
Query: 529 IIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
IIFV KR E I++ + GW AV + G K+Q++R+ + Q + A ILV
Sbjct: 520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILV 571
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/62 (29%), Positives = 36/62 (58%)
Frame = +2
Query: 308 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVL 487
RQT+M+SAT P V LA+ YL + + + IG++ + + ++ I + +K ++ +
Sbjct: 450 RQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEI 509
Query: 488 LQ 493
L+
Sbjct: 510 LE 511
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 74.5 bits (175), Expect = 1e-14
Identities = 38/84 (45%), Positives = 53/84 (63%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LV++PTRELA Q + + ++ V+GGAPK EQAR + ++I TPGRL+D
Sbjct: 240 LVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR-AAKNASVIIGTPGRLLD 298
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
+ G+ + + YLVLDEADRML
Sbjct: 299 LINDGSIDCSQVGYLVLDEADRML 322
Score = 66.9 bits (156), Expect = 3e-12
Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 7/89 (7%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPD------RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQL 412
+D GFE IR II PD RQT+ +SATWP+ V+ LA +L D ++I IGS +L
Sbjct: 322 LDTGFEQDIRNIISHT-PDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDEL 380
Query: 413 SANHNILQIVDICQE-HEKENKLNVLLQE 496
+A+ NI QIV+I + KE L+ LL++
Sbjct: 381 AASQNITQIVEILDDPRSKERMLDNLLRK 409
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 70.5 bits (165), Expect = 2e-13
Identities = 38/105 (36%), Positives = 54/105 (51%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
L+L PTRELA Q QV G V+ GG R+ L V IV+ TPGR++D
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD 175
Query: 183 FLEKGTTNLQRCTYLVLDEADRMLIWDLNHKSEKSLSKYAQTDRL 317
KG + CT V+DEAD++L + E+ LS + + ++
Sbjct: 176 LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQI 220
Score = 34.7 bits (76), Expect = 0.013
Identities = 20/86 (23%), Positives = 42/86 (48%)
Frame = +2
Query: 263 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIV 442
F P I +++ +RQ ++SAT+P VK + +L +IN+ + + Q
Sbjct: 203 FTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINL--MDELTLRGVTQYY 260
Query: 443 DICQEHEKENKLNVLLQEIGQSKNLV 520
E +K + LN L ++ +++++
Sbjct: 261 AFVDESQKVHCLNTLFSKLQINQSII 286
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 69.3 bits (162), Expect = 5e-13
Identities = 36/84 (42%), Positives = 46/84 (54%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
L+LAPTRELAQQIQ+V G V GG R+ L+ GV +V+ TPGR+ D
Sbjct: 91 LILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHD 150
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
+++ VLDEAD ML
Sbjct: 151 MIQRRALPTDAVQMFVLDEADEML 174
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = +1
Query: 523 KTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
+ +IF T+RK + ++ + + M GD Q +RD ++++F+ G + IL+
Sbjct: 260 QAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILI 313
Score = 33.5 bits (73), Expect = 0.029
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +2
Query: 260 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLS 415
GF+ QI I + + P Q ++ SAT P++V ++ ++ D I+I + +L+
Sbjct: 177 GFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELT 228
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 67.7 bits (158), Expect = 1e-12
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
+VLAPTRELA QI + G + VR+ + GG QA L + +++ TPGRL+D
Sbjct: 118 VVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMD 177
Query: 183 FLE--KGTTNLQRCTYLVLDEADRMLIWDLNHKSEKSL 290
LE KG +L+ YL++DEADR+L D +K L
Sbjct: 178 HLENTKG-FSLKNLKYLIMDEADRLLDMDFGPIIDKIL 214
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/90 (27%), Positives = 47/90 (52%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNI 430
+DM F P I KI++ I +R+TL++SAT +V+KL L +++ + S + S +
Sbjct: 202 LDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSS-KFSTVDTL 260
Query: 431 LQIVDICQEHEKENKLNVLLQEIGQSKNLV 520
+Q K+ L L+ E+ + ++
Sbjct: 261 IQRYLFFPFKHKDTYLVYLVNELAGNSIII 290
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 66.9 bits (156), Expect = 3e-12
Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
L+L PTRELA QI + A G +++ + GG Q+ DL + +V+ATPGRL D
Sbjct: 79 LILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLAD 138
Query: 183 FL----EKGTTNLQRCTYLVLDEADRML 254
+ E+ L+R +LV+DEADR+L
Sbjct: 139 LIRSNGEETIAGLRRIKFLVMDEADRLL 166
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 63.7 bits (148), Expect = 2e-11
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
++++PTRELA QI VA + + V GGA +R +A L +GV +++ATPGRL+D
Sbjct: 165 IIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLD 224
Query: 183 FLE--KGTTNLQRCTYLVLDEADRML 254
L+ KG + LV+DEADR+L
Sbjct: 225 HLQNTKGFV-FRNLRSLVIDEADRIL 249
Score = 30.7 bits (66), Expect = 0.21
Identities = 15/38 (39%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPD-RQTLMWSATWPKEVKKLA 361
+++GFE ++R+I++ + + RQTL++SAT +V+ LA
Sbjct: 249 LEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLA 286
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 63.3 bits (147), Expect = 3e-11
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 173
+++APTREL QQI VA + + ++ + V GG K+ + + +GV I+I TPGR
Sbjct: 220 VIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGR 279
Query: 174 LIDFLEK-GTTNLQRCTYLVLDEADRMLIWDLNHKSEKSLS 293
L D LE ++ + ++VLDE DR++ K LS
Sbjct: 280 LADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILS 320
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 60.9 bits (141), Expect = 2e-10
Identities = 32/83 (38%), Positives = 45/83 (54%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
L+L+P RELA Q +V DF + +R+ + GG EQ L +IV+ATPGR +
Sbjct: 143 LILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLH 202
Query: 183 FLEKGTTNLQRCTYLVLDEADRM 251
+ L Y+V DEADR+
Sbjct: 203 LKVEMKLELSSIEYVVFDEADRL 225
Score = 37.9 bits (84), Expect = 0.001
Identities = 22/82 (26%), Positives = 44/82 (53%)
Frame = +2
Query: 254 DMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNIL 433
+MGF Q+ +I+ + RQTL++SAT P+ + A+ L D + + + ++ + ++
Sbjct: 227 EMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRL-DVESKVSADLQ 285
Query: 434 QIVDICQEHEKENKLNVLLQEI 499
+ E+E L +LQ+I
Sbjct: 286 SAFFSVKTAEREAALLCILQDI 307
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 60.5 bits (140), Expect = 2e-10
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
L+L PTRELA Q VA + + GG + Q ++L + +IVIATPGR ID
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Query: 183 FLEKGT-TNLQRCTYLVLDEADRML 254
+ ++ +V+DEADRML
Sbjct: 394 HMRNSQGFTVENIEIMVMDEADRML 418
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/68 (23%), Positives = 34/68 (50%)
Frame = +2
Query: 260 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQI 439
GF ++ +II+ RQT+++SAT +V L L +++ + + + +A +
Sbjct: 421 GFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEF 480
Query: 440 VDICQEHE 463
V + + E
Sbjct: 481 VRVRPQRE 488
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 60.1 bits (139), Expect = 3e-10
Identities = 31/84 (36%), Positives = 43/84 (51%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
L+L+PTRELA QIQ V G V+ GG + L+ G +V TPGR+ D
Sbjct: 93 LILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTD 152
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
+ + + L+LDEAD +L
Sbjct: 153 MIRRRNLRTRNVKMLILDEADELL 176
Score = 40.3 bits (90), Expect = 3e-04
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +1
Query: 523 KTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
+ +IF ++RK + ++ +R + M G+ Q+ERD ++ F++G + +L+
Sbjct: 262 QAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLI 315
Score = 29.1 bits (62), Expect = 0.63
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 391
++ GF+ QI I + P Q ++ SAT P++V ++ + + ++I
Sbjct: 176 LNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRI 222
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 59.7 bits (138), Expect = 4e-10
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LV+APTRELA QI Q + +R + GG ++Q R L + +V+ATPGRL
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWS 255
Query: 183 FLEKG--TTNLQRCTYLVLDEADRML 254
+ + T N ++ LVLDEADR+L
Sbjct: 256 VINENNLTGNFKKIKCLVLDEADRLL 281
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 52.8 bits (121), Expect = 4e-08
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG-VEIVIATPGRLI 179
++L+PTRELA QI + A + + +R + GG K + + RG ++IATPGRL
Sbjct: 116 VILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLE 175
Query: 180 DFLEKGTTNLQRCT-YLVLDEADRML 254
D L+ T +LDEADR++
Sbjct: 176 DHLQNPRILESLSTDSFILDEADRLM 201
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 50.4 bits (115), Expect = 2e-07
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
LV++PTRELA Q + G + GG +E+ L R + I++ TPGRL+
Sbjct: 115 LVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQ 173
Query: 183 FLEKGTT-NLQRCTYLVLDEADRML 254
+++ + L+LDEADR+L
Sbjct: 174 HIDQAVNFDTSGLQMLILDEADRIL 198
Score = 34.7 bits (76), Expect = 0.013
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLA 361
+DMGF + I+ + RQT+++SAT K VK LA
Sbjct: 198 LDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLA 234
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 50.0 bits (114), Expect = 3e-07
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGH--TSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 176
L+L PTRELAQQ+ V + ++R V + Q L +IVIATP R
Sbjct: 92 LLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRC 151
Query: 177 IDFLEKGTTNLQRCTYLVLDEADRMLIWDLNHKSEKSLSK 296
+ + G L + +LV+DEAD ML + N + K+LS+
Sbjct: 152 VVHVASGVLPLDKLKFLVIDEADLMLSFGYN-EDMKTLSR 190
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 49.6 bits (113), Expect = 4e-07
Identities = 30/84 (35%), Positives = 46/84 (54%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
+ LAP+RELA+QI V + G + V+ FG K + + +IVI TPG ++D
Sbjct: 188 ICLAPSRELARQIMDVVTEMGKYTEVKTA--FG--IKDSVPKGAKIDAQIVIGTPGTVMD 243
Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
+++ + + VLDEAD ML
Sbjct: 244 LMKRRQLDARDIKVFVLDEADNML 267
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 523 KTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
++IIF + K AE I+R + G C+ G+ +RD ++ F+ G + +LV
Sbjct: 354 QSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLV 407
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 48.0 bits (109), Expect = 1e-06
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKR---EQARDLERGVEIVIATPG 170
LVL TRELA QI+ A F + VR +GG + E +D + IV+ATPG
Sbjct: 123 LVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPG 182
Query: 171 RLIDFLEKGTTNLQRCTYLVLDEADRML 254
RL + + + + VLDE D++L
Sbjct: 183 RLNALVREKILKVNSVKHFVLDECDKLL 210
Score = 34.3 bits (75), Expect = 0.017
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1
Query: 523 KTIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKE 663
+ +IFV++ +A + R +R +P++C+ G Q+ER + FK+
Sbjct: 297 QVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKD 343
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 46.0 bits (104), Expect = 5e-06
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATP 167
+V+ PTREL Q+ + + + ++ G R + L E ++++++TP
Sbjct: 209 VVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTP 268
Query: 168 GRLIDFLEKGTT-NLQRCTYLVLDEADRML 254
GRL+D + + +LQ Y+V+DEADR+L
Sbjct: 269 GRLVDHIRNDESFSLQHLRYMVIDEADRLL 298
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 43.2 bits (97), Expect = 4e-05
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK-REQARDLERGVEIVIATPGRLI 179
+++APTREL +QI + A + ++ + K +E+A L ++ I TP RL+
Sbjct: 119 IIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLV 178
Query: 180 DFLEKGTTNLQRCTYLVLDEADRM 251
++ G + ++ + V+DEADR+
Sbjct: 179 QAIQTG-LSFEKVEFFVMDEADRL 201
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 38.7 bits (86), Expect = 8e-04
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Frame = +3
Query: 3 LVLAPTRELAQQIQQVAADF---------GHTSYVRNTCVFG-GAPKREQARDLERGVEI 152
L++APTRELA QI V + G V + + G G + A E+ +
Sbjct: 76 LIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSV 135
Query: 153 VIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML 254
VI TPGRL + L + + L+LDEAD ++
Sbjct: 136 VIGTPGRLNEMLSH--ISSKHLEILILDEADTLI 167
Score = 29.5 bits (63), Expect = 0.48
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 251 VDMGFEPQIRKIIEQIRPDRQTLMWSAT 334
+DMGF+ ++ II Q+ R+T ++SAT
Sbjct: 167 IDMGFQRTLQSIISQLPKQRRTGLFSAT 194
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 29.9 bits (64), Expect = 0.36
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = +3
Query: 9 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 188
L TR +++ Q DF G P R L++G+E VI TP RL+
Sbjct: 99 LVCTRSISRHSNQKLLDFCVECKKHKIKCVGNFPC---GRCLKKGLECVIETPPRLLMNK 155
Query: 189 EKGTTNLQRCTYL 227
++ + NLQR +++
Sbjct: 156 DEISLNLQRLSHM 168
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 2.5
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Frame = +2
Query: 194 GHNQLTAVHIFSS**G*SYVDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 373
GH+QLT +HI ++ S D +R I+++ D Q S T + V+ A+D
Sbjct: 25 GHSQLTPIHIAAALLSDS--DSNGTTLLRTIVDKAGGDGQKFERSVT-SRLVRLPAQDPP 81
Query: 374 GDYIQINIGSLQLSANHNILQIVD----ICQEH-----EKENKLNVLLQEIG 502
+ + ++ S +L N + LQ I Q+H K++ L LL E G
Sbjct: 82 PEQVTLSPESAKLLRNAHELQKTQKDSYIAQDHFIAVFTKDDTLKSLLAEAG 133
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 455 EHEKENKLNVLLQEIGQSKNLVRKQ 529
EHE +N +NV + G SK LV+ Q
Sbjct: 465 EHEDKNLMNVFDTKNGTSKTLVKPQ 489
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 5.9
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +3
Query: 51 AADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR-LIDFL---EKGTTNLQRC 218
A FG S + C G KR RD+ G + ++ PG +D L K +L
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274
Query: 219 TYLVLDE 239
TY V E
Sbjct: 275 TYQVSGE 281
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -3
Query: 540 NKNYCFRTRFLLCPISCNN--TFNLF 469
N N+ F+T L+ P CNN +F+LF
Sbjct: 630 NVNFQFQTPLLIFPEDCNNPESFSLF 655
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 287 IEQIRPDRQTLMWSATWPKEVKKLAED 367
I + R +R TL S +P+E K L+ED
Sbjct: 268 IRKKRSERDTLNVSTEFPEETKDLSED 294
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 9 LAPTRELAQQIQQVAADFGHTSYVRN-TCVFGGAPKREQARDLERGVEIVIATPGRLIDF 185
+APT+ L Q Q+ A + T ++ T G + + TP +++
Sbjct: 122 MAPTKPLVTQ--QMEACYKITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILND 179
Query: 186 LEKGTTNLQRCTYLVLDEADR 248
++ G + R + LV+DEA R
Sbjct: 180 IKHGICDRTRISCLVIDEAHR 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,912
Number of Sequences: 5004
Number of extensions: 59888
Number of successful extensions: 263
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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