Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0855
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       77   2e-16
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 77.0 bits (181), Expect = 2e-16
 Identities = 37/84 (44%), Positives = 49/84 (58%)
 Frame = +3

Query: 3   LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 182
           ++++PTREL  QI Q    F   S ++    +GG     Q   L  G  I++ATPGRL+D
Sbjct: 277 VIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLD 336

Query: 183 FLEKGTTNLQRCTYLVLDEADRML 254
           F+EKG        +LVLDEADRML
Sbjct: 337 FVEKGRVKFSSVQFLVLDEADRML 360



 Score = 50.8 bits (116), Expect = 1e-08
 Identities = 23/53 (43%), Positives = 35/53 (66%)
 Frame = +1

Query: 526 TIIFVETKRKAENISRNIRRYGWPAVCMPGDKTQQERDEVLYQFKEGRASILV 684
           T++FVE K+KA+ I+  +    +P   + GD+ Q++R+E L  FK GR SILV
Sbjct: 454 TLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILV 506



 Score = 49.2 bits (112), Expect = 4e-08
 Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
 Frame = +2

Query: 182 FLGKGHNQLTAVHIFSS**G*SYVDMGFEPQIRKII--EQIRP--DRQTLMWSATWPKEV 349
           F+ KG  + ++V           +DMGF P I K++  E + P  +RQTLM+SAT+P EV
Sbjct: 337 FVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSATFPDEV 396

Query: 350 KKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQE 496
           + LA  +L +Y+ + +G +  + +       ++ +  +K+    +L +E
Sbjct: 397 QHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEILERE 445


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 541 ETKRKAENISRNIRRYGWPAVCMPGDKTQQERDE 642
           E ++K+    R  R+YG  +     D+T++ER +
Sbjct: 277 EREQKSYKNEREYRKYGETSKERSRDRTERERSK 310


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 174 LIDFLEKGTTNLQRCTYLVLDEADRMLIWDLNHKSEKSLSKY 299
           ++ FL++      +   ++  +  RMLI DL  K  KSL  +
Sbjct: 343 ILKFLKQKYVKNSKLEKVIKHDILRMLIIDLRKKQLKSLEDW 384


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 455 EHEKENKLNVLLQEIG 502
           ++  ENKLN  +++IG
Sbjct: 213 DYNLENKLNYFIEDIG 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,206
Number of Sequences: 438
Number of extensions: 4319
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)