Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0854
(543 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P55072 Cluster: Transitional endoplasmic reticulum ATPa... 127 2e-28
UniRef50_UPI0000E4A84B Cluster: PREDICTED: similar to valosin; n... 123 2e-27
UniRef50_A4ICJ9 Cluster: Transitional endoplasmic reticulum ATPa... 101 8e-21
UniRef50_Q4Y788 Cluster: Cell division cycle protein 48 homologu... 91 2e-17
UniRef50_A0EEE7 Cluster: Chromosome undetermined scaffold_91, wh... 62 6e-09
UniRef50_A5KAB5 Cluster: Cell division cycle ATPase, putative; n... 46 6e-04
UniRef50_Q4YQQ6 Cluster: Cell division cycle ATPase, putative; n... 45 0.001
UniRef50_Q7QWL6 Cluster: GLP_762_31096_33708; n=1; Giardia lambl... 41 0.021
UniRef50_A7AVE1 Cluster: Cell division cycle protein ATPase, put... 38 0.15
UniRef50_Q1JSD1 Cluster: Transitional endoplasmic reticulum ATPa... 37 0.35
UniRef50_Q5CJ12 Cluster: Putative uncharacterized protein; n=2; ... 36 0.46
UniRef50_A2QZY1 Cluster: Remark: Cdc48p of S. cerevisiae is more... 33 3.2
UniRef50_UPI0000499E59 Cluster: hypothetical protein 73.t00008; ... 33 5.6
UniRef50_Q28VJ3 Cluster: Putative uncharacterized protein; n=1; ... 33 5.6
UniRef50_Q4MZM6 Cluster: Cell division cycle protein 48, putativ... 33 5.6
UniRef50_UPI0000D5607F Cluster: PREDICTED: similar to Katanin p8... 32 7.4
UniRef50_UPI0000ECC241 Cluster: Laeverin (EC 3.4.-.-) (CHL2 anti... 32 7.4
UniRef50_Q5Z332 Cluster: Putative uncharacterized protein; n=9; ... 32 7.4
UniRef50_A5K794 Cluster: Putative uncharacterized protein; n=1; ... 32 7.4
UniRef50_Q4UBT9 Cluster: Cell divison cycle CDC48 homologue, put... 32 9.8
UniRef50_Q4E0K4 Cluster: Ubiquitin hydrolase, putative; n=3; Try... 32 9.8
UniRef50_A6R127 Cluster: Putative uncharacterized protein; n=1; ... 32 9.8
>UniRef50_P55072 Cluster: Transitional endoplasmic reticulum ATPase
(TER ATPase) (15S Mg(2+)- ATPase p97 subunit); n=169;
Eukaryota|Rep: Transitional endoplasmic reticulum ATPase
(TER ATPase) (15S Mg(2+)- ATPase p97 subunit) - Homo
sapiens (Human)
Length = 806
Score = 127 bits (306), Expect = 2e-28
Identities = 60/79 (75%), Positives = 73/79 (92%)
Frame = +1
Query: 19 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 198
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 199 RKETVCIVLSDDNCPDEKI 255
R+E VCIVLSDD C DEKI
Sbjct: 64 RREAVCIVLSDDTCSDEKI 82
Score = 125 bits (301), Expect = 8e-28
Identities = 53/66 (80%), Positives = 61/66 (92%)
Frame = +3
Query: 309 SIAPCPSVRYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRA 488
SI PCP V+YGKR+H+LPIDD+VEG+TGNLFEVYLKPYF+EAYRPI + D F+VRGGMRA
Sbjct: 101 SIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRA 160
Query: 489 VEFKVV 506
VEFKVV
Sbjct: 161 VEFKVV 166
>UniRef50_UPI0000E4A84B Cluster: PREDICTED: similar to valosin; n=3;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
valosin - Strongylocentrotus purpuratus
Length = 596
Score = 123 bits (297), Expect = 2e-27
Identities = 58/80 (72%), Positives = 73/80 (91%)
Frame = +1
Query: 16 MADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 195
MA+N S DD++TAILR K +PNRL+VEEA++DDNSVV+LSQAKM++LQLFRGDTV+LKGK
Sbjct: 1 MAEN-SGDDIATAILRTKAKPNRLVVEEAINDDNSVVSLSQAKMDELQLFRGDTVMLKGK 59
Query: 196 RRKETVCIVLSDDNCPDEKI 255
+R++TVCIVLSDD D+KI
Sbjct: 60 KRRDTVCIVLSDDTVTDDKI 79
Score = 68.5 bits (160), Expect = 9e-11
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = +3
Query: 393 NLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVV 506
NLF+VYL+PYF EAYRP+ + D F +RGGMRAVEFKVV
Sbjct: 99 NLFDVYLRPYFQEAYRPVRKGDIFQIRGGMRAVEFKVV 136
>UniRef50_A4ICJ9 Cluster: Transitional endoplasmic reticulum ATPase,
putative; n=2; Leishmania|Rep: Transitional endoplasmic
reticulum ATPase, putative - Leishmania infantum
Length = 690
Score = 101 bits (243), Expect = 8e-21
Identities = 43/65 (66%), Positives = 54/65 (83%)
Frame = +3
Query: 312 IAPCPSVRYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAV 491
I PC V YG RVH+LPIDD+VE LTG+LFE +LKPYF+E+YRP+ + D+F+ RG MR+V
Sbjct: 93 IVPCKDVPYGNRVHLLPIDDTVENLTGDLFENFLKPYFLESYRPVKKGDSFVCRGAMRSV 152
Query: 492 EFKVV 506
EFKVV
Sbjct: 153 EFKVV 157
Score = 87.0 bits (206), Expect = 2e-16
Identities = 38/63 (60%), Positives = 50/63 (79%)
Frame = +1
Query: 67 KDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPD 246
K + N+LIVEE +DDNSVV+L+ +ME+L +FRGDTVL+KGK+ + TVCI + DD CP
Sbjct: 11 KVKLNKLIVEEPYNDDNSVVSLNPKRMEELNIFRGDTVLVKGKKHRSTVCIAMEDDECPP 70
Query: 247 EKI 255
EKI
Sbjct: 71 EKI 73
>UniRef50_Q4Y788 Cluster: Cell division cycle protein 48 homologue,
putative; n=4; Plasmodium|Rep: Cell division cycle
protein 48 homologue, putative - Plasmodium chabaudi
Length = 250
Score = 91.1 bits (216), Expect = 2e-17
Identities = 37/66 (56%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Frame = +3
Query: 312 IAPCPSVRYGKRVHILPIDDSVEGLTGN-LFEVYLKPYFMEAYRPIHRDDTFMVRGGMRA 488
+ CP + YGK++ +LPIDD++EGL + LFE++LKPYF E+YRP+ + D F+VRGG +
Sbjct: 103 VKACPEIPYGKKIQVLPIDDTIEGLAKDTLFEIFLKPYFNESYRPVKKGDLFLVRGGFMS 162
Query: 489 VEFKVV 506
VEFKVV
Sbjct: 163 VEFKVV 168
Score = 84.6 bits (200), Expect = 1e-15
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +1
Query: 22 DNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRR 201
D K+ D + L +K RLIVEEA +DDNSVVAL+ +ME+L FRGDT+L+KGK+R
Sbjct: 6 DTKTLGDDNNGKLPKKKNLCRLIVEEATNDDNSVVALNTKRMEELNFFRGDTILIKGKKR 65
Query: 202 KETVCIVLSDDNCPDEKI 255
T+CI+L+D++ + KI
Sbjct: 66 HSTICIILNDNDLDEGKI 83
>UniRef50_A0EEE7 Cluster: Chromosome undetermined scaffold_91, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_91,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 772
Score = 62.5 bits (145), Expect = 6e-09
Identities = 29/51 (56%), Positives = 40/51 (78%)
Frame = +1
Query: 79 NRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSD 231
NRL+V E+ +DDNSVV L Q K+ +L+LF+GD VLL+GK K+TV I +S+
Sbjct: 17 NRLMVCESTADDNSVVQLCQDKLNELKLFKGDMVLLEGKNNKKTVAIAISN 67
Score = 60.1 bits (139), Expect = 3e-08
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = +3
Query: 309 SIAPCPSVRYGKRVHILPIDDSVEGLTG-NLFEVYLKPYFMEAYRPIHRDDTFMVRGGMR 485
+I P S+ +VHILP DS+ G NL + YL PYF++AYRP+ + D F+V+ +
Sbjct: 93 TIQPTASLPQLTKVHILPFQDSISGTNEKNLTQNYLIPYFLDAYRPVSKGDCFVVKMA-K 151
Query: 486 AVEFKVVA 509
+EFK++A
Sbjct: 152 EIEFKIIA 159
>UniRef50_A5KAB5 Cluster: Cell division cycle ATPase, putative; n=1;
Plasmodium vivax|Rep: Cell division cycle ATPase,
putative - Plasmodium vivax
Length = 1089
Score = 46.0 bits (104), Expect = 6e-04
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 76 PNRLIVEEAVSD-DNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSD 231
P+ +VE DN + LS+AKME+L L G TVLLKGK++KE + I D
Sbjct: 270 PSYCLVENVDEQIDNCEIYLSKAKMEELNLSEGFTVLLKGKKKKEMLAIAKLD 322
>UniRef50_Q4YQQ6 Cluster: Cell division cycle ATPase, putative; n=3;
Plasmodium (Vinckeia)|Rep: Cell division cycle ATPase,
putative - Plasmodium berghei
Length = 932
Score = 44.8 bits (101), Expect = 0.001
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +1
Query: 76 PNRLIVEEAVSD-DNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDD 234
PN +VE + DN + +S+ KM++L + G TVLLKGK++KE V IV D+
Sbjct: 101 PNYCLVENIDENADNFDIYMSKEKMKELNINDGFTVLLKGKKKKEMVAIVREDN 154
Score = 34.7 bits (76), Expect = 1.4
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 312 IAPCPSVRYGKRVHILPIDDSVEGLTGNLFEV-YLKPYFMEAYRPIHRDDTFMVRGGMRA 488
I P +++ K V + P +D+V +T E L Y +Y+P+ D+T + +
Sbjct: 181 IYPLSNIKNIKNVILSPFNDTVNNITKQEIEKEILNTYLKNSYKPLSVDNTIYINYKNKR 240
Query: 489 VEFKVVAQI 515
+E KV+ I
Sbjct: 241 IELKVLKLI 249
>UniRef50_Q7QWL6 Cluster: GLP_762_31096_33708; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_762_31096_33708 - Giardia lamblia
ATCC 50803
Length = 870
Score = 40.7 bits (91), Expect = 0.021
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +1
Query: 79 NRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDN 237
NR IV + D+S + LS K+ L LF+GD V LKG+ K T +V S ++
Sbjct: 12 NRFIVNDNPGGDDSQIILSSEKVNVLDLFQGDYVRLKGRFGKTTHAMVQSRED 64
Score = 33.5 bits (73), Expect = 3.2
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +3
Query: 381 GLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGM----RAVEFKVV 506
G T +LF++ + PYF + RP+ +TF V R +EFKVV
Sbjct: 136 GPTYDLFDICIAPYFKDKCRPVTEGNTFKVMTTSLPVNREIEFKVV 181
>UniRef50_A7AVE1 Cluster: Cell division cycle protein ATPase,
putative; n=1; Babesia bovis|Rep: Cell division cycle
protein ATPase, putative - Babesia bovis
Length = 922
Score = 37.9 bits (84), Expect = 0.15
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +1
Query: 76 PNRLIVEEAVSDDNSVVALSQAK--MEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDE 249
PN L V V D NS + + K +L + G+ V ++GK+R +TVC+V D N D
Sbjct: 133 PN-LFVLSGVFDGNSSIEIRMGKEPANKLGVAEGNLVRVRGKKRCDTVCVVGIDPNITDN 191
Query: 250 KI 255
++
Sbjct: 192 QV 193
>UniRef50_Q1JSD1 Cluster: Transitional endoplasmic reticulum ATPase;
n=1; Toxoplasma gondii|Rep: Transitional endoplasmic
reticulum ATPase - Toxoplasma gondii
Length = 792
Score = 36.7 bits (81), Expect = 0.35
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1
Query: 145 MEQLQLFRGDTVLLKGKRRKETVCIVLSD 231
M LQ+ RGD VLL G+R++ETV I + D
Sbjct: 1 MAALQVQRGDVVLLSGRRKRETVAIAMPD 29
>UniRef50_Q5CJ12 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium hominis
Length = 413
Score = 36.3 bits (80), Expect = 0.46
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +3
Query: 342 KRVHILPIDDSV-EGLTGNLFEVYLKPYFME-AYRPIHRDDTFMVRGGMRAVEFKVVA 509
KR+H++P D++ + + ++F+ YLKP+ + P ++F G V+FK++A
Sbjct: 202 KRIHVMPFSDTLPQTYSFDIFQDYLKPFLSRYTFHPFSEGESFTYNG----VQFKIIA 255
>UniRef50_A2QZY1 Cluster: Remark: Cdc48p of S. cerevisiae is more
than twice the length of this protein; n=1; Aspergillus
niger|Rep: Remark: Cdc48p of S. cerevisiae is more than
twice the length of this protein - Aspergillus niger
Length = 302
Score = 33.5 bits (73), Expect = 3.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 372 SVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVA 509
+ E L+G L ++ PYF R I+ D + G +EFKV++
Sbjct: 179 TTENLSGRLLHDFVNPYFTRCTRLINVHDHIFISSGACDIEFKVLS 224
>UniRef50_UPI0000499E59 Cluster: hypothetical protein 73.t00008;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 73.t00008 - Entamoeba histolytica HM-1:IMSS
Length = 586
Score = 32.7 bits (71), Expect = 5.6
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +1
Query: 16 MADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFR-----GDTV 180
++D+ S DD+ T + + + L ++ DD+ AL++ + E+ + F D
Sbjct: 130 ISDSDSDDDVKTDVKKTTTKKEELSDSDSDDDDDIAAALAKKRAERAKKFAISDSDSDDD 189
Query: 181 LLKGKRRKETVCIVLSDDNCPDEKI 255
+K +K T I LSD + D+ I
Sbjct: 190 DIKPAAKKTTKKISLSDSDSDDDDI 214
>UniRef50_Q28VJ3 Cluster: Putative uncharacterized protein; n=1;
Jannaschia sp. CCS1|Rep: Putative uncharacterized
protein - Jannaschia sp. (strain CCS1)
Length = 348
Score = 32.7 bits (71), Expect = 5.6
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 31 SPDDLST--AILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 204
S DL+T A++R + +P R+ + DD + + + ME L GD + L G++
Sbjct: 259 SAADLATGRAVVRDRTKPMRIFYH-LMLDDPACLLVENCPMETAHL--GDVMALGGRQIS 315
Query: 205 ETVCIVLSD 231
+ C VLSD
Sbjct: 316 QAACPVLSD 324
>UniRef50_Q4MZM6 Cluster: Cell division cycle protein 48, putative;
n=1; Theileria parva|Rep: Cell division cycle protein
48, putative - Theileria parva
Length = 954
Score = 32.7 bits (71), Expect = 5.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 109 DDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVC 216
+ N V + +A+ +L + GD + +KG+RRK TVC
Sbjct: 154 NSNVNVRIGKAQANKLSVMPGDLLKVKGRRRKVTVC 189
>UniRef50_UPI0000D5607F Cluster: PREDICTED: similar to Katanin p80
WD40-containing subunit B1 (Katanin p80 subunit B1) (p80
katanin), partial; n=1; Tribolium castaneum|Rep:
PREDICTED: similar to Katanin p80 WD40-containing
subunit B1 (Katanin p80 subunit B1) (p80 katanin),
partial - Tribolium castaneum
Length = 777
Score = 32.3 bits (70), Expect = 7.4
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = -2
Query: 371 IINWQYVDSFSISH*RTRSDGYHIRKTHTKVVSHNTVHPIFSSGQLSSESTMQTVSLRRL 192
++NW V SI+ + +H+ VV N VHP+ SS + S+R+
Sbjct: 254 MVNWSGVADISIAQNQLVGASFHLTNVQVYVVDLNKVHPLNSSTETPPSPFTPNQSIRK- 312
Query: 191 PLSKTVSP 168
SK P
Sbjct: 313 SFSKAERP 320
>UniRef50_UPI0000ECC241 Cluster: Laeverin (EC 3.4.-.-) (CHL2
antigen).; n=2; Gallus gallus|Rep: Laeverin (EC 3.4.-.-)
(CHL2 antigen). - Gallus gallus
Length = 958
Score = 32.3 bits (70), Expect = 7.4
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 363 IDDSVEGLTGNLFEVY--LKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVAQIH 518
+ DS++G N +EVY LK Y ++ PI+R +R + A+E AQ+H
Sbjct: 697 VPDSMDGTLKN-YEVYPLLKKYLLKRMLPIYRYYAGFIRKNVDALEDDYFAQVH 749
>UniRef50_Q5Z332 Cluster: Putative uncharacterized protein; n=9;
Actinomycetales|Rep: Putative uncharacterized protein -
Nocardia farcinica
Length = 152
Score = 32.3 bits (70), Expect = 7.4
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +2
Query: 410 LEAVLHGGLPSDPS*RHLHGPRGHARRRVQSGRTDP 517
L A L LP+D RH HG RGH R V P
Sbjct: 77 LLAALRDLLPADDRWRHAHGSRGHGRSHVMPAMIAP 112
>UniRef50_A5K794 Cluster: Putative uncharacterized protein; n=1;
Plasmodium vivax|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 615
Score = 32.3 bits (70), Expect = 7.4
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 342 KRVHILPIDDSVEGLTG-NLFEVYLKPYFMEAYRPI-HRDDTFMVRGGMRAVEFKVV 506
+ VHI+P+ D++ N+F Y+KPY Y + DTF +G V+FK++
Sbjct: 370 RNVHIVPLYDTLPTTYNYNIFADYIKPYIERHYLSLFSMHDTFFYKG----VQFKIM 422
>UniRef50_Q4UBT9 Cluster: Cell divison cycle CDC48 homologue,
putative or transitional endoplasmic reticulum ATPase,
putative; n=1; Theileria annulata|Rep: Cell divison
cycle CDC48 homologue, putative or transitional
endoplasmic reticulum ATPase, putative - Theileria
annulata
Length = 905
Score = 31.9 bits (69), Expect = 9.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 109 DDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVC 216
+ N V + + + +L L GD V ++G+RRK TVC
Sbjct: 129 NSNVNVKIGKEQANKLNLMTGDFVKVRGRRRKVTVC 164
>UniRef50_Q4E0K4 Cluster: Ubiquitin hydrolase, putative; n=3;
Trypanosoma cruzi|Rep: Ubiquitin hydrolase, putative -
Trypanosoma cruzi
Length = 1135
Score = 31.9 bits (69), Expect = 9.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 175 CHHGRVEVAPFWPVKVP 125
CHH R +++PFW + VP
Sbjct: 752 CHHTRTQLSPFWDISVP 768
>UniRef50_A6R127 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 885
Score = 31.9 bits (69), Expect = 9.8
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 76 PNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKET 210
P R +A SD+ S+V + ++ + +++ RGDT L KGKR+ T
Sbjct: 407 PERCGDVDATSDERSMVVVEESYLP-VEIDRGDTRLGKGKRKAST 450
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,268,138
Number of Sequences: 1657284
Number of extensions: 11119599
Number of successful extensions: 31944
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 30917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31939
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34989170748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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