Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0854
         (543 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   3.0  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   3.0  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   4.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.2  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 134 HRPKWSNFNSSVVTQSCSRANAARKPFASC-SQTIIALMRKSDEPCCEK 277
           H P+ S   S  +TQ       +++P A    +T + +   SD  C  K
Sbjct: 24  HSPQQSIIVSGSITQPTKTVIQSKRPLAPAPERTSVLVTNNSDLRCKRK 72


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 209 PFASCSQTIIALMRKSDEPCCEKQPS 286
           PF+ C+ T        ++P   KQPS
Sbjct: 62  PFSPCNNTANYKSEAQNQPSSYKQPS 87


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 79  WVCPCDGGSRSINHQGFYYLPFYS 8
           W+C     + S   + FYYLP  S
Sbjct: 49  WICALVNYNVSEISENFYYLPAMS 72


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 382  VLLAIYSKYT*SRTSWRLTVRSIVTTPSWSA 474
            +LL IYS +  +  SW     ++V  P  +A
Sbjct: 1017 LLLVIYSVFNMNNVSWGTREVTVVPKPDPNA 1047


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 382  VLLAIYSKYT*SRTSWRLTVRSIVTTPSWSA 474
            +LL IYS +  +  SW     ++V  P  +A
Sbjct: 1017 LLLVIYSVFNMNNVSWGTREVTVVPKPDPNA 1047


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 143 KWSNFNSSVVTQSCSRANAARKPFASCSQTI 235
           K SN N     ++CS A   +   +SC + I
Sbjct: 183 KASNGNKCCCLRTCSSAKRPKFENSSCDEDI 213


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,189
Number of Sequences: 336
Number of extensions: 2772
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)