Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0854
(543 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 103 1e-23
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 29 0.59
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 29 0.59
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 29 0.59
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 28 0.77
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 28 1.0
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 28 1.0
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 27 1.8
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 26 3.1
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.1
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 4.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.1
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 4.1
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 5.5
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 5.5
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 25 9.5
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 9.5
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 103 bits (248), Expect = 1e-23
Identities = 43/66 (65%), Positives = 56/66 (84%)
Frame = +3
Query: 309 SIAPCPSVRYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRA 488
+I PCP ++Y +R+ +LP+ D+VEGLTG+LF+VYLKPYF+EAYRPI + D F+VRG MR
Sbjct: 121 TINPCPDIKYAERISVLPLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQ 180
Query: 489 VEFKVV 506
VEFKVV
Sbjct: 181 VEFKVV 186
Score = 98.3 bits (234), Expect = 6e-22
Identities = 46/79 (58%), Positives = 60/79 (75%)
Frame = +1
Query: 10 NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 189
N D S +D +TAILR+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++K
Sbjct: 21 NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80
Query: 190 GKRRKETVCIVLSDDNCPD 246
GKRRK+TV IVL+D+ D
Sbjct: 81 GKRRKDTVLIVLTDEEMED 99
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 0.59
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 378 QLNHQLAVCGLV---FHISLKDTERWI 307
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 0.59
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +1
Query: 31 SPDDLSTAILRRKDRPNRLIVEEAVSDDNS--VVALSQAKMEQLQLFRGDTVLLKGKRRK 204
S +D+S + RR R + + A S D++ V A S +L G+T+ K
Sbjct: 243 STEDMSFMLERRLQGHQRWVWDCAFSADSTYLVTASSDHVARLWELSSGETIRQYSGHHK 302
Query: 205 ETVCIVLSD 231
VC+ L+D
Sbjct: 303 AAVCVALND 311
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 0.59
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 378 QLNHQLAVCGLV---FHISLKDTERWI 307
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 0.77
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 35 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 148
L + R + DP ++ + Q + T+SWH FH +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = -2
Query: 425 EVRLQVYFE*IASKTLN*IINWQYVDSFSISH*RTRSDGYHIRKTHTKVVSHNTVHPIFS 246
+++LQ F + N + +W Y FS S S Y+++ H +VV ++ P+F
Sbjct: 531 KLKLQGIFSSSFQQVSNNMYSWIYDHVFSSSDHAYESLIYYMKTGHKQVVQSFSIFPVFR 590
Query: 245 SGQL 234
Q+
Sbjct: 591 VCQM 594
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 27.9 bits (59), Expect = 1.0
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 14 KWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCS 187
KW++ A+ P S + + PT+S + + SA TT +RP S S + +
Sbjct: 293 KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKNRSPPINFDGT 352
Query: 188 RANAARKPFASCS 226
+AA F+ S
Sbjct: 353 SYDAAGNVFSPSS 365
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 517 WICATTLNSTARMPPRTMKVSSRWIGR*ASMKYGFK 410
WI L + +PP+ +K+S+ +IG S++ F+
Sbjct: 344 WIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFR 379
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 26.2 bits (55), Expect = 3.1
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +2
Query: 50 PRSSVARTDPT-VSLSKKQSAMTTQSWHFHR---PKWSNFNSSVVTQSCSRANAARKPFA 217
P SS A+ T +SL +K M H H K S F + + A +
Sbjct: 20 PSSSPAKAQRTHLSLEEKIKLMRLVVRHKHELVDRKTSEFYAKIARIGYEDEGLAIHTES 79
Query: 218 SCSQTIIALMRKSDEPCCEKQP 283
+C II++MR ++ +QP
Sbjct: 80 ACRNQIISIMRVYEQRLAHRQP 101
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 56 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRANA 199
SSV S S ++M++ + +F+ S+ +SSV T + S +N+
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNS 376
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 34 PD-DLSTAILRRKDRPNRLIVEEAVSD 111
PD D + + + RK+ PNRL++ A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +1
Query: 7 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 165
L +A N + L+T +RK + N ++ +A ++ N+ +++ A E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.8 bits (54), Expect = 4.1
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +3
Query: 312 IAPCPSVRYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAV 491
I PSV Y K + + P ++ + G E + +YRP DD +RG + V
Sbjct: 650 IIQVPSV-YHKHI-VGPKGTTLNAIIGKSEENVIVQLGKVSYRPDSTDDDVYIRGFSKDV 707
Query: 492 EFKVVAQI 515
E +VV++I
Sbjct: 708 E-RVVSEI 714
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +1
Query: 94 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 207
E+AV D+N+ ++L+ + + RGD ++ G ++
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLERD 284
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 5.5
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +1
Query: 88 IVEEAVSDDNSVVALSQA-KMEQLQLFR---GDTVLLKGKRRKETVC 216
+ +E SD++ ++A++ EQ+ R D LL GK++KE +C
Sbjct: 509 LFKELGSDNSELIAVTNVLPEEQVNFLRWSFDDKDLLIGKQKKEIIC 555
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -3
Query: 487 ARMPPRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTRF 341
+ +P +K I A++ G T +PV P+ ++G + TRF
Sbjct: 362 SHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRF 410
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +2
Query: 122 SWHFHRPKWSNFNSSVVTQSCSRANAARKPFASCSQTIIALMRKSDEP 265
S HF +W V SR+ + R SC Q I+ + + D+P
Sbjct: 1252 SEHFQDTRWKIIYDHVCKLCLSRSRSLRAASLSCLQRIV--VEQLDQP 1297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,248
Number of Sequences: 5004
Number of extensions: 44935
Number of successful extensions: 169
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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