Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0854
(543 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 122 3e-28
SB_43150| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12) 29 1.9
SB_13629| Best HMM Match : Extensin_2 (HMM E-Value=0.35) 29 2.5
SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13) 28 4.3
SB_48490| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17) 27 7.5
SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17) 27 7.5
SB_20221| Best HMM Match : RVT_1 (HMM E-Value=0.00045) 27 7.5
SB_12337| Best HMM Match : RVT_1 (HMM E-Value=0.00049) 27 7.5
SB_9404| Best HMM Match : RVT_1 (HMM E-Value=0.00051) 27 7.5
SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8) 27 7.5
SB_23879| Best HMM Match : rve (HMM E-Value=2.2e-17) 27 7.5
SB_23778| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18) 27 7.5
SB_6928| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_11276| Best HMM Match : Metallothio_5 (HMM E-Value=9.5) 27 9.9
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 122 bits (293), Expect = 3e-28
Identities = 56/73 (76%), Positives = 67/73 (91%)
Frame = +1
Query: 37 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVC 216
D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TVC
Sbjct: 5 DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTVC 64
Query: 217 IVLSDDNCPDEKI 255
IVLSDD D+KI
Sbjct: 65 IVLSDDTISDDKI 77
Score = 34.3 bits (75), Expect = 0.065
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 456 DTFMVRGGMRAVEFKVV 506
D F+VRGGMRAVEFKV+
Sbjct: 104 DMFLVRGGMRAVEFKVI 120
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 509 TDPSPFCIVAP 541
TDPSP+CIVAP
Sbjct: 122 TDPSPYCIVAP 132
>SB_43150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 616
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 451 VTTPSWSAGACAPSSSKWSHRSI-TILHRGSW 543
V P+ S+ C+P SS+W ++I T+ ++G W
Sbjct: 388 VYQPTNSSELCSPESSQWDRKAIVTVKNQGPW 419
>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 53 RSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRANAARKP 211
RSSV R T ++ K S +T ++W +WSN++ + S SR ++ R P
Sbjct: 364 RSSV-REQATATVMSKGSYITIRNW----TRWSNYSGGGYSISNSRPSSRRNP 411
>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
Length = 672
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 91 VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDN 237
+EE + D +V+ S LQL R T +LK K ++ +++ D++
Sbjct: 141 IEERIEDSCFLVSTSTTNSTTLQLLRNMTGILKSDSDKVSIGVLVDDES 189
>SB_13629| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
Length = 487
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 350 DSFSISH*RTRSDGYHIRKTHTKVVSHNTVHPI 252
D ++ H TR+DGY + T T+ S+ HP+
Sbjct: 221 DGYTDKHPGTRTDGYTDKHTVTRTDSYTDKHPV 253
>SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)
Length = 1134
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = -3
Query: 511 CATTLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMW 350
C L++ P P + W G + Y F T LP R S + I +W
Sbjct: 379 CTKYLDAIRHFPIPSNITDMRSWFGLINQVSYAFAATERMLPFRKSLKPGIQFLW 433
>SB_48490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 287 TKVVSHNTVHPIFSSGQLSSESTMQTVSLRRLPLSKTVSP 168
T + + TV P++ GQ + T S+ LP TVSP
Sbjct: 57 TSLPNRPTVSPVYQIGQQYHQFTKSANSISSLPNRPTVSP 96
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 287 TKVVSHNTVHPIFSSGQLSSESTMQTVSLRRLPLSKTVSP 168
T + + TV P++ GQ + T S+ LP TVSP
Sbjct: 173 TSLPNRPTVSPVYQIGQQYHQFTKSANSISSLPNRPTVSP 212
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 287 TKVVSHNTVHPIFSSGQLSSESTMQTVSLRRLPLSKTVSP 168
T + + TV P++ GQ + T S+ LP TVSP
Sbjct: 115 TSLPNRPTVSPVYQIGQQYLQFTKSANSITSLPNRPTVSP 154
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 287 TKVVSHNTVHPIFSSGQLSSESTMQTVSLRRLPLSKTVSP 168
T + + TV P++ GQ + T S+ LP TVSP
Sbjct: 144 TSLPNRPTVSPVYQIGQQYLQFTKSANSITSLPNRPTVSP 183
>SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1017
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -3
Query: 511 CATTLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 344
C L++ + P P + W G + Y F T LP R S + WT+
Sbjct: 222 CQKYLDTIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 278
>SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1229
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -3
Query: 511 CATTLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 344
C L++ + P P + W G + Y F T LP R S + WT+
Sbjct: 469 CQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 525
>SB_20221| Best HMM Match : RVT_1 (HMM E-Value=0.00045)
Length = 955
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -3
Query: 511 CATTLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 344
C L++ + P P + W G + Y F T LP R S + WT+
Sbjct: 506 CQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 562
>SB_12337| Best HMM Match : RVT_1 (HMM E-Value=0.00049)
Length = 447
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -3
Query: 511 CATTLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 344
C L++ + P P + W G + Y F T LP R S + WT+
Sbjct: 274 CQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 330
>SB_9404| Best HMM Match : RVT_1 (HMM E-Value=0.00051)
Length = 471
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -3
Query: 511 CATTLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 344
C L++ + P P + W G + Y F T LP R S + WT+
Sbjct: 347 CQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 403
>SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8)
Length = 420
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -3
Query: 511 CATTLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 344
C L++ + P P + W G + Y F T LP R S + WT+
Sbjct: 62 CQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 118
>SB_23879| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1273
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -3
Query: 511 CATTLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 344
C L++ + P P + W G + Y F T LP R S + WT+
Sbjct: 809 CQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 865
>SB_23778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -3
Query: 511 CATTLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 344
C L++ + P P + W G + Y F T LP R S + WT+
Sbjct: 60 CQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 116
>SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18)
Length = 838
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -3
Query: 511 CATTLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 344
C L++ + P P + W G + Y F T LP R S + WT+
Sbjct: 94 CQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 150
>SB_6928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 287 TKVVSHNTVHPIFSSGQLSSESTMQTVSLRRLPLSKTVSP 168
T + + TV P++ GQ + T S+ LP TVSP
Sbjct: 57 TSLPNRPTVSPVYQIGQQYLQFTKSANSISSLPNRPTVSP 96
>SB_11276| Best HMM Match : Metallothio_5 (HMM E-Value=9.5)
Length = 72
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 182 CSRANAARKPFASCSQTIIALMRKSDEPCCE 274
CS+ + RK CS I+ S CCE
Sbjct: 17 CSQYDKKRKSIRKCSDPIVVCTAGSRRQCCE 47
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,245,042
Number of Sequences: 59808
Number of extensions: 373239
Number of successful extensions: 1385
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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