Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0853
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    82   1e-16
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   9.0  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 37/63 (58%), Positives = 44/63 (69%)
 Frame = +3

Query: 510 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPE 689
           LF  A+ IT+          AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPE
Sbjct: 190 LFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPE 249

Query: 690 VYI 698
           VYI
Sbjct: 250 VYI 252



 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 44/147 (29%), Positives = 53/147 (36%), Gaps = 3/147 (2%)
 Frame = +1

Query: 4   KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNIXXXXXXXXXXXXXX 177
           KDI  LY                    EL  PGS  L G+ Q+YN+              
Sbjct: 18  KDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFI 77

Query: 178 XXXXWRIW-KLXXXXXXXXXXXXXPTKNNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 354
               +  +                P  NN  F              + E G G G TVYP
Sbjct: 78  IPALFGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYP 137

Query: 355 PLSSNIAHRGRSVDLAIFSLHLAGISS 435
           PLSS  +H G ++DLAI SL L GISS
Sbjct: 138 PLSSITSHSGPAIDLAILSLQLTGISS 164



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +2

Query: 200 GN*LVPLILGAPDIAFPRKII*DFDSYPPPL 292
           GN LVPL++GAPD+A+PR     F   PP L
Sbjct: 86  GNYLVPLMIGAPDVAYPRVNNFTFWLLPPAL 116



 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 698 LILPGFGIISHII 736
           LI+P FG++SHII
Sbjct: 253 LIMPAFGVVSHII 265


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 273 TPTPLPYIINFKKNCRKWCRNRMNS 347
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,549
Number of Sequences: 5004
Number of extensions: 42442
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)