Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0852
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    26   2.5  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   4.4  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   5.8  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    25   5.8  

>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 105 ESDKVEDNVDREKLELTSSEQRDI 176
           +SD V++ +D  K  L+S+E+RD+
Sbjct: 396 DSDNVDEYIDDHKRGLSSTERRDL 419


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 442 EHTQSFHRPGKYVESNVPPH 383
           +H  +FH      +SN+PPH
Sbjct: 688 QHHANFHNKAGISQSNIPPH 707


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +1

Query: 304 LLKLKLLSSPANILKTQIEHQILVGTS 384
           ++ +KL+   AN+  ++I+H +++ TS
Sbjct: 125 IVNVKLVRPKANVFVSEIQHLLVIATS 151


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 63  TMVLFVCKCLNVSL--ESDKVEDNVDREKLELTSSEQRDIFFS 185
           T+VLF+ +C N+ L  E+ K  D   R  L   + +  D+F S
Sbjct: 117 TLVLFLTECCNIYLFSENKKPVDQKIRSDLLEQTFKNNDVFES 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,371
Number of Sequences: 5004
Number of extensions: 32656
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)