Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0852
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0072 - 486211-486254,486350-486524,486658-486852,487489-48...    28   4.3  
05_05_0143 + 22675463-22675592,22676227-22676414,22676492-226766...    27   5.7  
04_04_1209 + 31755637-31755821,31756017-31756165,31756703-317568...    27   10.0 
01_07_0344 - 42869465-42869502,42869597-42869771,42869923-428701...    27   10.0 
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     27   10.0 

>05_01_0072 -
           486211-486254,486350-486524,486658-486852,487489-487599,
           487693-487905,488432-488539,488621-488762,489157-490418,
           490460-490480,490842-491228
          Length = 885

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 96  VSLESDKVEDNVDREKLELTSSEQRDIFFSEV 191
           V   +D+      ++KLE  S+E++D+ FSE+
Sbjct: 554 VEFSADQYGSRFIQQKLETASTEEKDMVFSEI 585


>05_05_0143 +
           22675463-22675592,22676227-22676414,22676492-22676649,
           22676656-22676953,22677035-22677867,22677950-22678120,
           22678242-22678458,22678911-22678949,22679167-22679226
          Length = 697

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 66  MVLFVCKCLNVSLESDKVEDNVDREKLELTSSEQRDIFFSEVPSV-NISWP*LISKG 233
           +V +V +CL    + + +    ++E + L S++ +D  F+E+  V N++W   + KG
Sbjct: 569 VVDYVNQCLWAYQDKEYIMCAHNQEVIYLNSNKSKDYDFTEITKVLNMAWGPYVEKG 625


>04_04_1209 +
           31755637-31755821,31756017-31756165,31756703-31756845,
           31756902-31757024
          Length = 199

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 12  FAEFKXVIVFLSHQYSHTM-VLFVCKCLNVSLESDKVEDNVDR 137
           +A  + ++ FLSHQ SH + +  V + ++      ++  N+D+
Sbjct: 86  YALLRKILAFLSHQISHEIKITRVLRAVHTGAHDRRLPGNLDK 128


>01_07_0344 -
           42869465-42869502,42869597-42869771,42869923-42870117,
           42870678-42870788,42870899-42871111,42871551-42871658,
           42871732-42871873,42872150-42873449,42874032-42874085,
           42874491-42874923
          Length = 922

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 96  VSLESDKVEDNVDREKLELTSSEQRDIFFSEV 191
           V   +D+      ++KLE  S+E++D+ F+E+
Sbjct: 593 VEFSADQYGSRFIQQKLETASTEEKDMVFAEI 624


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 93   NVSLESDKVEDNVDRE-KLELTSSEQRDIFFSEV 191
            NVSLE+ K E+N+  E + E  +SE  D+  +EV
Sbjct: 3995 NVSLETLKTEENIMLEDEREKNTSEHTDLIRAEV 4028


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,387,452
Number of Sequences: 37544
Number of extensions: 176894
Number of successful extensions: 316
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)