Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0850
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    67   3e-12
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    29   0.72 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   3.8  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   3.8  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   6.7  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
 Frame = +1

Query: 61  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADEGTD 237
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  Q GD+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 238 SAVES 252
              E+
Sbjct: 60  EGTET 64



 Score = 62.1 bits (144), Expect = 8e-11
 Identities = 35/84 (41%), Positives = 47/84 (55%)
 Frame = +3

Query: 258 DIVLNHRLVETYAFGDKKSYTLYLKDYMXXXXXXXXXXXXDQVEVFKTNMNKVMKDILGR 437
           ++V + RL  T +F DKKSY  Y+K YM            ++V VF+ N    +K IL  
Sbjct: 67  NLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILAN 124

Query: 438 FKELQFFTGESMDCDGMVAMMEYR 509
           FK+  F+ GESMD D MV +M YR
Sbjct: 125 FKDYDFYIGESMDPDAMVVLMNYR 148


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -1

Query: 615 ASLELLSYLLSNI*NFSSSRPCLKNIMIGICVP 517
           AS ELL+ L     NFS+ R CL+N ++  CVP
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVP 812


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 98   ISSPVIMSL*IFILMDWRRLKII 30
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 120 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 10
           +F  + + L T +  LI   +  +E+IK  KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 199 FNPSAEEADEGTDSAVESGLT*S*TTG*SKHTPSVTRNPTHCTSKT 336
           +NPS    D G    V+S  T S  T     T S+T  PT  ++ T
Sbjct: 826 YNPSQYGCDNGALGPVQSSSTTSSITPTPTTTSSITPTPTTTSTTT 871


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,946
Number of Sequences: 5004
Number of extensions: 61995
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)