Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0850
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    52   5e-07
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656...    34   0.11 
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993...    29   5.3  
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239...    28   7.0  
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    28   9.2  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 32/85 (37%), Positives = 44/85 (51%)
 Frame = +3

Query: 255 VDIVLNHRLVETYAFGDKKSYTLYLKDYMXXXXXXXXXXXXDQVEVFKTNMNKVMKDILG 434
           VDIV   RL E   F DKK +  ++K Y+            ++ E FK N+    K +LG
Sbjct: 68  VDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIEGATKYLLG 123

Query: 435 RFKELQFFTGESMDCDGMVAMMEYR 509
           + K+LQFF GESM  DG +    Y+
Sbjct: 124 KLKDLQFFVGESMHDDGGLVFAYYK 148



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
 Frame = +1

Query: 61  MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 231
           M +Y+D++TGDE+ SD++  + ++  +++EV G+ V +   D+ I G NPSAE    DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59

Query: 232 TD 237
            D
Sbjct: 60  VD 61


>01_05_0142 -
           18564697-18564792,18564824-18564928,18565606-18565678,
           18566262-18567637
          Length = 549

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
 Frame = -2

Query: 593 ISYLTFRISLLLDH-V*KTS*LVFAYHQSPIFHHGNHAITIHRLPSKEL----KFLKPAE 429
           IS+LT +++  L++ +      +   H+   FHH  H   ++  PSK+L    ++L+   
Sbjct: 214 ISFLTDKVAQSLENFIQYHPRAIQEAHRPKDFHHMLHLFQMYLKPSKKLVEGSQYLERGR 273

Query: 428 DVFHYFVHVCFKYFNLVKRL 369
             FH F ++C++Y  + ++L
Sbjct: 274 -YFHSFANICYRYLKIGRKL 292


>01_07_0122 -
           41196081-41196205,41197561-41198245,41198961-41199329,
           41199405-41199514,41200539-41200833
          Length = 527

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 512 SPIFHHGNHAITIHRLPSKELKFLKPAEDVFHYFVH 405
           +P+ HHG+H    H    ++ +   PA+   HY VH
Sbjct: 346 APMHHHGHHHHHHHHHGHEDSRHSAPAQAPVHYPVH 381


>02_01_0336 +
           2397648-2397812,2398367-2398441,2398860-2398975,
           2399155-2399269,2399360-2399488,2399809-2399856,
           2400369-2400448,2400628-2400824,2400916-2401202,
           2401281-2401307,2401353-2401538,2401633-2402094,
           2402201-2402350,2402612-2402687,2402851-2402978,
           2403244-2403435,2403559-2403690,2403767-2403889,
           2404128-2404346,2404518-2404679
          Length = 1022

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 375 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLA 277
           APS  +   + SYSL GT   +   RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719


>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 166 TRAQGDIQIEGFNPSAEEADEGTDSAVES 252
           TR+   +Q++GF PSA ++ +G+ + V S
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSS 855


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,707,665
Number of Sequences: 37544
Number of extensions: 364757
Number of successful extensions: 726
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)