Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0848
         (744 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.5  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.0  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   6.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   6.0  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   7.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   7.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 69  KVGIIQHSLILDVFKMPVISNDQRQA 146
           KVG   HS  ++V+ +P + + ++QA
Sbjct: 496 KVGSADHSARINVYGLPFVRSMEKQA 521


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 605 IPFHSYENFKRHHNLAITANDCLCADN 525
           +PF  +EN KR +N+ +        DN
Sbjct: 336 VPFDLFENKKRKNNIKLYVRRVFIMDN 362


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 302 VGFETTFFAACHPL*LKYVPTGLTVLNACLCRYF 201
           + FE  ++A C PL   Y+ T       CL  +F
Sbjct: 164 ISFER-YYAICKPLKAGYICTKTRASLICLLAWF 196


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 302 VGFETTFFAACHPL*LKYVPTGLTVLNACLCRYF 201
           + FE  ++A C PL   Y+ T       CL  +F
Sbjct: 164 ISFER-YYAICKPLKAGYICTKTRASLICLLAWF 196


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 4/20 (20%)
 Frame = +2

Query: 23  CLVFKLHKNKCSS----KCQ 70
           C++ K H+N+C +    KCQ
Sbjct: 82  CIIDKTHRNQCRACRLKKCQ 101


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 4/20 (20%)
 Frame = +2

Query: 23  CLVFKLHKNKCSS----KCQ 70
           C++ K H+N+C +    KCQ
Sbjct: 82  CIIDKTHRNQCRACRLKKCQ 101


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,592
Number of Sequences: 336
Number of extensions: 3683
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)