Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0848
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.1  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    26   6.5  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   8.6  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   8.6  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   8.6  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +3

Query: 204 ISTKTRVKNCQPCWHIFQLERMTRCKERSFKANSPSRTRCRSLKLHKT 347
           I+  T + +C  C+H+F L  + +  + S +  +    RC   + ++T
Sbjct: 204 INPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYCQSNQT 251


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 668 VDQKSKHYDMKFTRHKEIHYC--IPFHSYENFKRHHNLAITAND 543
           V+Q  K   +   R K    C  + F S+  F +HH L   +ND
Sbjct: 29  VEQNEKLLQLLHIRAKSASSCSDLLFKSFSKFNKHHPLNEESND 72


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = -3

Query: 484 RSGRRVIFGHFKTDPRLHRPGHFYKPASALNHENRPFPNNKKRL*AVLC 338
           RS R  +  H K    LH    FY P S   +    +PNN   L  V C
Sbjct: 575 RSLRSKLQAHLKLAAPLH--DKFYVPHSPPKYTMETYPNNVLSLSTVTC 621


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 421 HFYKPASALNHENRPFPNN 365
           H Y+P  +L  EN+ FP+N
Sbjct: 74  HIYEPNDSLFKENQDFPSN 92


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -2

Query: 608 CIPFHSYE--NFKRHHNLAITAN 546
           CIP+HS E  NF    N++ T N
Sbjct: 78  CIPYHSVENLNFNIRQNISTTLN 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,271
Number of Sequences: 5004
Number of extensions: 60071
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)