Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0848
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0725 - 6480773-6481203,6481802-6482801                           29   5.2  
04_04_1257 - 32155935-32156526,32156655-32157067                       28   9.0  

>08_01_0725 - 6480773-6481203,6481802-6482801
          Length = 476

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 538 CALTTL*NNLSTRRSTWLRSGRRVIFGHFKTDPRLHRPGH-FYKPASALNHENRPFPNN 365
           C L+ L    +  + T LR  R+++  +   D  +H        P SA+NH N  F  N
Sbjct: 361 CQLSVLLTKTAEIQRTTLRLSRQLVSSNNNIDDIIHSTNAPLAPPNSAINHGNNTFSTN 419


>04_04_1257 - 32155935-32156526,32156655-32157067
          Length = 334

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 538 CALTTL*NNLSTRRSTWLRSGRRVIFGHFKTDPRLHRPGHFYKPA-SALNHENRPFPNN 365
           C L+ L    +  + T LR  R+++  +   D  +H       P  SA+NH N  F  N
Sbjct: 219 CQLSVLLTKTAEIQRTTLRLSRQLVSSNSNIDDIIHNTNAPPAPPNSAINHSNNIFSTN 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,976,962
Number of Sequences: 37544
Number of extensions: 356632
Number of successful extensions: 610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)