Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0844
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    27   2.4  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    27   2.4  
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    27   3.2  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    27   3.2  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.3  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   7.5  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   9.9  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.9  

>SPAC19A8.08 |upf2||nonsense-mediated decay protein
            Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 17   TLSTLWTSRGPGFDVQLRARPPGFGAPRLGREDREHS 127
            +L T    + PGFDV L  R    G+P + R +   S
Sbjct: 957  SLLTRMHEKNPGFDVPLPLRASSLGSPYVTRNEESAS 993


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 557 QYKTKCTSQTKASYLLKNYIQNKIQYT-SNDLDELL 453
           Q   + TS   A Y LKN+ QN  +YT S D+ +LL
Sbjct: 116 QIPEEMTSPVFAFYRLKNFYQNHRRYTVSADMFQLL 151


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 42  EALGSTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKA 164
           EA G+TF + RAL   + RA        L  +Q+  +RA+A
Sbjct: 126 EAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARA 166


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 42  EALGSTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKA 164
           EA G+TF + RAL   + RA        L  +Q+  +RA+A
Sbjct: 126 EAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARA 166


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 602 MLFYVLKTTYGNTMLQYKTKCTSQTKASYLLKNYIQNKI 486
           +L+   K  Y      Y TK T++T A  +LK+Y   K+
Sbjct: 381 VLYKNAKVLYEKAFRDYSTKKTTRTFAEIVLKHYQLQKL 419


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 620 LLHKCDMLFYVLKTTYGNTMLQYKTKCTSQ 531
           L+  C +LF  +KTT+G     Y  K  +Q
Sbjct: 224 LVTNCSLLFEAIKTTFGLEKDSYVVKAGNQ 253


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 398 ALNQ*KCVKNISLPTYYLTVLQN*IKKLFFCLVFKYKRMLESVNS 264
           A++  K   N+SLPT  L      I K+F C+    K  L+ +N+
Sbjct: 37  AVSHIKNAINVSLPTALLRRPSFDIGKVFACIKCNVKVSLDEINA 81


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 100 PGEGRPRTFSPDSRS*SSVLRPTVSQQSANTLPALFLRWPLLNRTLSNLTLIN 258
           P + R   +S  S S S+   P  S  + + LP +     LLN + ++ +LIN
Sbjct: 176 PSQERVNEYSLPSNSNSTYTTPLQSINNEHPLPTVLENNALLNNSGNSPSLIN 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,683
Number of Sequences: 5004
Number of extensions: 51690
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)