Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0844
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1721 - 39426957-39428005,39428812-39428839 69 3e-12
06_03_0718 + 23840198-23840409,23841368-23841518,23842190-238422... 68 6e-12
11_01_0448 - 3469398-3469676,3470015-3470284,3470386-3470476,347... 65 4e-11
08_01_0142 - 1121762-1122822,1123087-1123114 60 1e-09
05_04_0255 + 19462668-19462695,19463443-19464491 60 2e-09
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 40 0.002
03_01_0169 + 1385813-1388359 34 0.12
09_02_0625 + 11334418-11334499,11335067-11335164,11335758-113358... 29 2.5
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 29 2.5
04_04_0869 - 28883688-28884983 29 3.3
09_02_0473 - 9690050-9690802,9690891-9691423,9692202-9692776,969... 29 4.4
>01_06_1721 - 39426957-39428005,39428812-39428839
Length = 358
Score = 68.9 bits (161), Expect = 3e-12
Identities = 32/66 (48%), Positives = 43/66 (65%)
Frame = +3
Query: 57 TFSYGRALQASVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNF 236
+FS+GRALQ S L+AWGGKTEN++ Q+ I R KAN A +G Y ++ AS+S
Sbjct: 293 SFSFGRALQQSTLKAWGGKTENVVKAQKAFITRCKANSEATLGTYQGDAVLGEGASESLH 352
Query: 237 VKSHAY 254
VK + Y
Sbjct: 353 VKDYKY 358
>06_03_0718 +
23840198-23840409,23841368-23841518,23842190-23842294,
23843476-23843608,23844164-23844849,23844937-23845299
Length = 549
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/66 (48%), Positives = 42/66 (63%)
Frame = +3
Query: 57 TFSYGRALQASVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNF 236
TFS+GRALQ S ++ WGGK EN+ A Q + R KAN A +GKY G+ A S+S +
Sbjct: 485 TFSFGRALQQSTIKKWGGKKENVAAAQAAFLARCKANSEATLGKY-GGAAGDAATSESLY 543
Query: 237 VKSHAY 254
VK + Y
Sbjct: 544 VKGYTY 549
>11_01_0448 -
3469398-3469676,3470015-3470284,3470386-3470476,
3470581-3470690,3470867-3471136,3471768-3471914
Length = 388
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/66 (46%), Positives = 43/66 (65%)
Frame = +3
Query: 57 TFSYGRALQASVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNF 236
+FSY RALQ + L+ WGG+ EN+ A Q L+ RAKAN LA +GKY + + A + F
Sbjct: 324 SFSYARALQNTCLKTWGGQPENVKAAQDALLLRAKANSLAQLGKYTSDG-EAAEAKEGMF 382
Query: 237 VKSHAY 254
VK++ Y
Sbjct: 383 VKNYVY 388
>08_01_0142 - 1121762-1122822,1123087-1123114
Length = 362
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +3
Query: 57 TFSYGRALQASVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNF 236
TFS+GRALQ S L+AW GK EN+ Q L+ R +AN A +G Y + S++
Sbjct: 297 TFSFGRALQQSTLKAWAGKAENVGKAQAALLARCRANSQATLGAYAGDAAAGEGVSENLH 356
Query: 237 VKSHAY 254
VK + Y
Sbjct: 357 VKDYKY 362
>05_04_0255 + 19462668-19462695,19463443-19464491
Length = 358
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/66 (43%), Positives = 39/66 (59%)
Frame = +3
Query: 57 TFSYGRALQASVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNF 236
+FS+GRALQ S L+AW GK ENI + + R KAN A +G Y ++ AS+S
Sbjct: 293 SFSFGRALQQSTLKAWSGKAENIEKARAAFLTRCKANSEATLGTYKGDAVLGEGASESLH 352
Query: 237 VKSHAY 254
VK + Y
Sbjct: 353 VKDYKY 358
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 57 TFSYGRALQASVLRAWGGKTENILAGQQELIKRAK 161
+FSY RALQ + L+ WG + EN+ A Q EL A+
Sbjct: 375 SFSYARALQNTCLKTWGSRRENVAAAQGELAGAAR 409
>03_01_0169 + 1385813-1388359
Length = 848
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 64 ATGAPSRLRCSAPGEGRPRTFSPDSRS*SSVLR-PTVSQQSANTLPALF 207
A GA S + S PG+ RTF PD+ SS R P V+ +NT+P L+
Sbjct: 27 ACGAASNV--SFPGDSPARTFVPDAPFLSSAGRVPAVTSTGSNTIPPLY 73
>09_02_0625 +
11334418-11334499,11335067-11335164,11335758-11335831,
11335996-11336598,11336692-11337185,11338035-11338170,
11338417-11338488,11338581-11338652,11339078-11339226,
11340129-11340364,11340567-11340693,11341011-11341079,
11341172-11341361,11341465-11341857,11342084-11342195
Length = 968
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 575 YGNTMLQYKTKCTSQTKASYLLKNYIQNKIQYTSND 468
Y N + Y K +TK YLL NYI YTS++
Sbjct: 379 YNNDLWNYDNK---KTKPPYLLANYINGTTPYTSDN 411
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 410 DVMKLF-FFHNTFLKTIIRLSRSMYTVFYFEYNFLVNTML*FGLCILSCTV 559
++M+LF N +K ++R+ Y V F Y+ V +L FGL +C+V
Sbjct: 451 ELMQLFGLTWNFIMKYVLRMKEDSYFVPSFPYHTEVPKVLLFGLLGFTCSV 501
>04_04_0869 - 28883688-28884983
Length = 431
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = -1
Query: 239 DKVRFRSGQRRNRAGNVFADCCETVGLSTLDQLLLSGENVLGLPSPGAEHRSLEGAPVAE 60
D V +G ++R + D TV + T+D +LL E G PSP P A
Sbjct: 290 DDVSMDTGMDKSRVASTVLDDTPTV-IHTVDSVLLPPELFGGAPSPAPAPGPASDVPAAS 348
Query: 59 RRTQG 45
+G
Sbjct: 349 PAPEG 353
>09_02_0473 -
9690050-9690802,9690891-9691423,9692202-9692776,
9693476-9693507
Length = 630
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 390 SIKMR*KYIFTYLLLNSLTKLN 325
++K R +YIFTYLL N +LN
Sbjct: 333 AVKKRDEYIFTYLLQNKAVELN 354
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,722,676
Number of Sequences: 37544
Number of extensions: 294229
Number of successful extensions: 778
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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