Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0843
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 46 6e-06
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 27 2.9
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 27 3.8
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 3.8
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 26 5.0
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 5.0
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 26 6.6
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 6.6
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 25 8.8
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 25 8.8
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 25 8.8
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 46.0 bits (104), Expect = 6e-06
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 562 EPWYWWSKFHERLDWDKRVGVVLELS-ADLPSQEVVKRWLGEPVKAIIVPTSIFHNNKKG 738
E W W + R+ V LEL A P E+V RW EP++ I + F N G
Sbjct: 174 ETWKMWDTIRSACGYHPRLKVALELPPACSPPIELVNRWYAEPIEMITMSCMAFVPNPNG 233
Query: 739 YPVL 750
YPVL
Sbjct: 234 YPVL 237
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 335 RHEDYLNEELSYCRGLGVPAI----MISIHGRESNNLARILQTYYETSHHPSLIWACVPM 502
RH D +N+ L + G+G+P I + I+ E NL +++ + S+ S+ P+
Sbjct: 99 RHSDNINKFLDFIHGIGLPEIFHFELTDIY--EGKNLPKVIYCIHALSYFLSMQDLAPPL 156
Query: 503 L 505
+
Sbjct: 157 I 157
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 230 YAVRYGSITQDWTSRIVAKLSPYI 301
+ RYG +T +WTS I + L P I
Sbjct: 39 FIFRYGFLTWEWTSAIRSALHPLI 62
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 111 QLLCIHNHKIFLAVPFFLFNSFTS*RRRKTFYKLPL 4
QLL + NH+ +PF + SF++ RR F +PL
Sbjct: 17 QLLTVVNHR---TIPFKIRGSFSNCRRYSNFATVPL 49
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 26.6 bits (56), Expect = 3.8
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Frame = +2
Query: 266 TSRIVAKLSPYINVDSPSATVRQRHEDYLN-----EELSYCRGLGVPAIMISIHGRESNN 430
++RI A SP ++ + + + +L+ EEL GL + I +GR ++
Sbjct: 2043 SARIAANFSPVPIINGGNGSKEHPTQAFLDLYTIREELGSVNGLTITFIGDLKYGRTVHS 2102
Query: 431 LARILQTYYETSHHPSLIWACVPMLCVEHIE-NALKMMKKRKL 556
LAR+L ++ H S +P + I N L ++ R+L
Sbjct: 2103 LARLLAFWHVELHLVSPEQLALPDDVKDDIRANGLNFIEHREL 2145
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 713 DVGTIIAFTGSPSHLFTTSCDGRSADNSKTTPTRLSQSRRSWNLDHQYQ 567
D+ I + LF + C G + D+S + T+LSQS + +L H Y+
Sbjct: 268 DIELITCKFSKLNSLFLSKCIGLT-DSSLLSLTKLSQSLTTLHLGHCYE 315
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 505 MCRTYRECTEDDEEEKAWNEPWYWWSK 585
M R C DD+ + WN +W SK
Sbjct: 536 MARYCLRCVYDDKMDSLWNSRSFWVSK 562
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 98 FITTRYFLLCHFFYLILSQANGVAKHFTN 12
F+ +++++L F YL LS A A F N
Sbjct: 365 FLDSKFYVLIDFLYLYLSIARESADDFAN 393
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 96 EYIITADLQTCLTEALQCSYSFIV-SPIIH 182
E+I +L T L E L+C Y I +P +H
Sbjct: 395 EFISNTNLPTILPEILECFYDNITYTPFVH 424
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 676 LGEPVKAIIVPTSIFHNNKKGYP 744
LG P K+ VPTS+ N + +P
Sbjct: 318 LGRPTKSPSVPTSVGSNKSRKFP 340
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +2
Query: 392 AIMISIHGRESNNLARILQTYYETSHHPSLIWACVPMLCVEHIENALKMMKKR 550
AI I + + N L I QT T P +IW+C ++H + + + R
Sbjct: 39 AIEIEVEKKLLNRLKSI-QT--NTFERPDIIWSCCHYKIIQHFRSRFREIHPR 88
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 263 WTSRIVAKLSPYINVDSPSATVRQR--HEDYLNEELSYCRGLGVPAI 397
WT K +++VDS + + +E +++SYC G G+ ++
Sbjct: 192 WTEVYSNKQQRWVHVDSGEESFDEPLIYEQGWGKKMSYCLGFGIDSV 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,337,833
Number of Sequences: 5004
Number of extensions: 73588
Number of successful extensions: 203
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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