Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0843
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0406 - 17688069-17690643,17691065-17691132                       31   1.3  
07_03_1568 - 27788314-27788619,27789125-27789294,27789868-277899...    31   1.3  
03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432     31   1.3  
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821...    29   3.0  
04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951...    29   3.0  
12_02_0929 - 24493168-24493458,24493545-24493643,24493768-244938...    29   4.0  
11_06_0647 + 25870470-25870744,25870765-25871533                       28   6.9  

>10_08_0406 - 17688069-17690643,17691065-17691132
          Length = 880

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 404 SIHGRESNNLARILQTYYETSHHPSLIWACVPMLCVEHI 520
           ++H   S N+ R++ TY+  +H P L W C  ++ V  +
Sbjct: 554 TVHVFSSWNIVRMVCTYHRAAHRPWLRWLCFLVIRVRFL 592


>07_03_1568 -
           27788314-27788619,27789125-27789294,27789868-27789979,
           27790063-27790117,27790201-27790316,27790731-27790812,
           27790974-27791228,27791326-27791454,27791539-27791747
          Length = 477

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 260 DWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEE--LSYCRGLGVPAIMISIH 412
           DW SR++A    Y+ +D P+AT      D + E   +   R LG+   +++ H
Sbjct: 203 DWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRALGLETPLMTTH 255


>03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432
          Length = 314

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = +2

Query: 308 DSPSATVRQRHEDYLNEELSYCRGLGVPAIMISIHGRESNNLARILQTYYETSHHPSLIW 487
           D PS  +      + +   S+ RG+G  A+   IHG  +  LA  +  +      P +++
Sbjct: 176 DDPSVVITTYEGQHCHHTASFQRGVGGAAVAAHIHGAAAVALAEQMSAFVSPPPQPHMLY 235

Query: 488 ACVPMLCVEHIENAL 532
             +P L     E A+
Sbjct: 236 G-LPRLHPPSSETAV 249


>10_08_0883 +
           21279913-21280235,21281066-21281327,21281998-21282199,
           21282289-21282436,21282541-21283084
          Length = 492

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 556 WNEPWYWWS--KFHERLDWDKRVGVVLELSADLP 651
           W +PWYWWS       L W K+    L  +A++P
Sbjct: 285 WFKPWYWWSWPILPLGLSWHKQRWDDLGYAAEMP 318


>04_04_0739 -
           27693768-27694305,27694765-27694912,27694987-27695188,
           27695802-27695864,27695865-27696120,27697811-27697953
          Length = 449

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 556 WNEPWYWWS--KFHERLDWDKRVGVVLELSADLP 651
           W +PWYWWS       L W ++    L  S++LP
Sbjct: 244 WFKPWYWWSWPVLPLGLSWHEQRRENLGYSSELP 277


>12_02_0929 -
           24493168-24493458,24493545-24493643,24493768-24493872,
           24494101-24494193,24494438-24494530,24494646-24494699,
           24494816-24494917,24495058-24495132,24495245-24495418
          Length = 361

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 169 RPLFTHVFVGNPQMPVKMVVLRGQIWF 249
           R L T +FVGNP   + M  ++   WF
Sbjct: 252 RDLITRIFVGNPASRITMPEIKNHPWF 278


>11_06_0647 + 25870470-25870744,25870765-25871533
          Length = 347

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 523 ECTEDDEEEKAWNEPWYWWSKFHERLDWDKRVGVVLELSADLPSQEVVKRW 675
           E T+DD+EE    E      ++HE   WD+R    L +S  LP  E  + W
Sbjct: 240 ENTQDDKEESERQEEEKTTEEWHEWYKWDERSDRSL-VSIALPLIEAGEVW 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,992,710
Number of Sequences: 37544
Number of extensions: 454999
Number of successful extensions: 1115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)