Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0843
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31120.2 68417.m04418 Skb1 methyltransferase family protein c...    62   3e-10
At4g31120.1 68417.m04417 Skb1 methyltransferase family protein c...    62   3e-10
At4g21770.1 68417.m03150 pseudouridine synthase family protein c...    30   1.9  
At5g57970.1 68418.m07253 methyladenine glycosylase family protei...    29   2.5  
At2g35710.2 68415.m04379 glycogenin glucosyltransferase (glycoge...    29   2.5  
At2g35710.1 68415.m04380 glycogenin glucosyltransferase (glycoge...    29   2.5  

>At4g31120.2 68417.m04418 Skb1 methyltransferase family protein
           contains Pfam profile:  PF05185 Skb1 methyltransferase
          Length = 584

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 26/72 (36%), Positives = 42/72 (58%)
 Frame = +1

Query: 538 DEEEKAWNEPWYWWSKFHERLDWDKRVGVVLELSADLPSQEVVKRWLGEPVKAIIVPTSI 717
           D+  +  N+ W  W+ F    + D ++ V L++ + LPS+  + RW+GE V+A I+ T  
Sbjct: 169 DDTSEGLNDSWELWNSFRLLCEHDSKLSVALDVLSTLPSETSLGRWMGESVRAAILSTDA 228

Query: 718 FHNNKKGYPVLS 753
           F  N +GYP LS
Sbjct: 229 FLTNARGYPCLS 240


>At4g31120.1 68417.m04417 Skb1 methyltransferase family protein
           contains Pfam profile:  PF05185 Skb1 methyltransferase
          Length = 642

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 26/72 (36%), Positives = 42/72 (58%)
 Frame = +1

Query: 538 DEEEKAWNEPWYWWSKFHERLDWDKRVGVVLELSADLPSQEVVKRWLGEPVKAIIVPTSI 717
           D+  +  N+ W  W+ F    + D ++ V L++ + LPS+  + RW+GE V+A I+ T  
Sbjct: 169 DDTSEGLNDSWELWNSFRLLCEHDSKLSVALDVLSTLPSETSLGRWMGESVRAAILSTDA 228

Query: 718 FHNNKKGYPVLS 753
           F  N +GYP LS
Sbjct: 229 FLTNARGYPCLS 240


>At4g21770.1 68417.m03150 pseudouridine synthase family protein
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 472

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 260 DWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELS--YCRGLGVPAIMISIH 412
           DW SRIVA    Y+ +D P+ T      D + E  +    R L +P  + + H
Sbjct: 206 DWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPEPLKTTH 258


>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 347

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 317 SATVRQRHEDYLNEELSYCRGLGVPAIMISIHGRESNNLARILQTY 454
           +A++ +RHE  LN  LS        A M S H R S    R++++Y
Sbjct: 78  AASILRRHEQNLNSNLSLNASFSSDASMDSFHSRAST--GRLIRSY 121


>At2g35710.2 68415.m04379 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-2 from
           Homo sapiens [SP|O15488]
          Length = 389

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +1

Query: 556 WNEPWYWWS--KFHERLDWDKRVGVVLELSADLP 651
           W +PWYWWS         W ++    +  SA++P
Sbjct: 183 WLKPWYWWSWPVLPLGFSWHEQRRATIGYSAEMP 216


>At2g35710.1 68415.m04380 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-2 from
           Homo sapiens [SP|O15488]
          Length = 497

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +1

Query: 556 WNEPWYWWS--KFHERLDWDKRVGVVLELSADLP 651
           W +PWYWWS         W ++    +  SA++P
Sbjct: 291 WLKPWYWWSWPVLPLGFSWHEQRRATIGYSAEMP 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,173,981
Number of Sequences: 28952
Number of extensions: 375296
Number of successful extensions: 932
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)