Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0842
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    30   0.43 
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    29   0.57 
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    29   0.99 
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    28   1.7  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    28   1.7  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    27   3.0  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    27   3.0  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   4.0  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   4.0  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      26   5.3  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   5.3  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    26   5.3  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    26   5.3  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   7.0  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   9.2  

>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +2

Query: 347 ENSPLTGQEELAEIINDFKNNVFTISEVEKLVMEWKNRNETQQSLKEKQEQLN 505
           E S  + +++ AEI N F +++    E+  +  E+   + +QQS++E+    N
Sbjct: 65  EYSEFSNEDDEAEIDNSFADSIPNEPEIPDMQDEYSRDSHSQQSVEEQNNTTN 117


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 368 QEELAEIINDFKNNVFTISEVEKLVMEWKN 457
           Q+E  E +N  ++NV  I E EKL  E +N
Sbjct: 457 QDEYVETLNKLRSNVTAIEETEKLYAEEEN 486


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 21/92 (22%), Positives = 41/92 (44%)
 Frame = +1

Query: 349 KQPFDRPRGISGNNKRLQKQRFYHIRSRKTGDGMEKQKRNSTVAERKTGTVEQVREEYDK 528
           +Q     + I    +RL+++RF      K     E+Q+       RK   +E+ ++E ++
Sbjct: 92  EQSITESQRIFSEKQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEKKEKER 151

Query: 529 IQHRIKENMKRPTPFERVKKMFSKNKNKHHES 624
           I+  I+E   +     R+K+     K K  E+
Sbjct: 152 IR-LIEEQKHKENEQRRLKQEQIDAKRKEEEA 182


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 69  LPCHDDTADRI-QQAIENDYLFQPSNIKVESPKFRPNNLYMNSSRL 203
           +P  +++A  + ++AIE      P   K+++ +F P N+Y++  RL
Sbjct: 475 IPSENNSASNLAEKAIEQKEEEDPELSKLDAARFVPANIYVSKDRL 520


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = +1

Query: 385 NNKRLQKQRFYHIRS-RKTGDGMEKQKRNSTVAERKTGTVEQVREEYDKIQHRIKENMKR 561
           N+K +  +RF  + + RKTGD  + +K+ + V  +    +  +++    +       +KR
Sbjct: 436 NDKTMTSKRFDDLSATRKTGDNTKDRKQANKVRRQDQFFISHIQKYASSLTGAKGGQLKR 495

Query: 562 PTPFERVKKMFSKNKNKHHESNTGTIEKRNGNTR 663
            T F +      ++K    E  +     +  NT+
Sbjct: 496 QTIFTQGPNSTKESKQAVKEETSVKNSPKGKNTK 529


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 54  LYQNELPCHDDTADRIQQAIENDYLFQPSNIKVESPK 164
           LY +E PC D + + +   +EN+   +P N+ V+S K
Sbjct: 137 LYVSECPCGDASMELLASRLENN---KPWNLTVDSEK 170


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 129 FQPSNIKVESPKFRPNNLYMNSSRLMPQ 212
           F+   + +   K  PNN+  NSSR++ Q
Sbjct: 123 FKKKELSISEHKINPNNVIHNSSRILGQ 150


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 592 FSKNKNKHHESNTGTIEKR 648
           F K+K K H+SNT +I +R
Sbjct: 23  FGKSKGKSHKSNTSSIHER 41


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/66 (22%), Positives = 37/66 (56%)
 Frame = +2

Query: 230 VLTHGRIQTFNIETPTSDISQINLSTKDIRSSGSIKTSKENSPLTGQEELAEIINDFKNN 409
           VLT   ++  ++ +PT +++   L++ D+RSS + +T  +  P     +++  + + KN+
Sbjct: 395 VLTGSSMRRPSVTSPTFEVAARPLTSMDVRSSHNAETEVQAIP--AATDISPEVKEGKNS 452

Query: 410 VFTISE 427
              I++
Sbjct: 453 ENAITK 458


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
 Frame = +1

Query: 373 GISGNNKRLQKQRFYHIRSRKTGDGMEKQKRNSTVAERKTGTVEQVREEYDKIQHRIKEN 552
           G++ +    Q Q     +S +     EKQK+N  +    T + ++VRE     Q  +  N
Sbjct: 20  GVNLDELEQQAQTQVQAQSSQVVVPSEKQKQNLNLPNSYTNSSQKVRESTVNSQASLSSN 79

Query: 553 MKRPTPFER--VKKMFSKNKNKHHESNTGTIEKRNGNTR 663
             R     +     +   N  K  E+N   +E  N + +
Sbjct: 80  DLRTELLIKSGENAILRANLLKQSEANNAALESLNNSIK 118


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = +2

Query: 263 IETPTSDISQINLSTKDIRSSGSIKTSKENSPLTGQEELAEIINDFKNNVFTISEVEKLV 442
           I T    +SQ+ +  K +R       S+    L   EEL  +    K +   + ++ K++
Sbjct: 356 ITTLIGKMSQVQIECKRLRKENLFLQSERTHLLRELEELRHLATSAKEDFVKVEKLNKII 415

Query: 443 MEWKNRN 463
            + +N N
Sbjct: 416 KD-ENEN 421


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +1

Query: 418 HIRS---RKTGDGMEKQKRNSTVAERKTGTVEQVREE 519
           H+R+   R++GD M K++R+ +   R T   +  REE
Sbjct: 180 HLRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREE 216


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 541 IKENMKRPTPFERVKKMFSKNKNKHHESNTGTIEKRNGNTRP 666
           IKE++ + T    V+++ +K K K  E   G  EK++   +P
Sbjct: 196 IKEHILQETGDATVEELQNKGKEKQKELKKGKREKKDEEEKP 237


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 256  RLDSSVGEYKNTSGCCGMRRELFIYKLFGLNFGLSTLI 143
            R+D+ +  +KN   C  ++ +L + + F L FG   L+
Sbjct: 913  RIDACMPSFKNIITCKSLKAKLRLAQTFHLEFGPKELL 950


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 574 ERVKKMFSKNKNKHHESNTGTIEKR 648
           E  K++ +K+  KHHE N  +IEK+
Sbjct: 210 ESWKQLLAKDFLKHHERNLCSIEKQ 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,284
Number of Sequences: 5004
Number of extensions: 60331
Number of successful extensions: 247
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)