Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0841
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    29   0.83 
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    27   2.5  
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr...    27   3.3  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    26   5.8  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    26   5.8  

>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 189 PYRVPSLTHYLKNAQKKRLTSGHLTNACTPLFRQ 290
           P R P +   ++  +  +  + HL NAC+PLFR+
Sbjct: 119 PSREPLILRTIEALRGAKNATVHLYNACSPLFRE 152


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/63 (25%), Positives = 35/63 (55%)
 Frame = +3

Query: 111 SRTDYPREHKWLI*VQQLHSRSRYKRPYRVPSLTHYLKNAQKKRLTSGHLTNACTPLFRQ 290
           SR DYP   +++  ++++H     +    VPS+    +N+++K   S + +++ TP + +
Sbjct: 65  SRWDYPYPREYIEELKKIHGVHHVEENRDVPSILENYRNSKRK---SHNFSSSNTP-YLK 120

Query: 291 KHR 299
            HR
Sbjct: 121 LHR 123


>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +2

Query: 80  QPSNWNLNRF--IEDRLSTGTQVAHLS 154
           QP NW+   F  ++DR+  G+ ++HL+
Sbjct: 7   QPENWHEQDFRAVDDRVRGGSSISHLT 33


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 569 FIKFYVTFLLNYNYIFTYSHI 507
           F+KF  T++L  +Y+  Y+HI
Sbjct: 165 FLKFGATYVLTKSYLAKYTHI 185


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 624 DNLFCILNICKLFFIY 671
           D + C+LN CK+ F Y
Sbjct: 270 DKIICLLNCCKVIFSY 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,536
Number of Sequences: 5004
Number of extensions: 51944
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)