Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0841
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)           29   4.6  

>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 380  VYSLLVC*PSMSAIVCLPLLVAL*H*SPMLLSEEWCASVSQMTACQSLLLCILQVVC 210
            V++ L    ++S  VCLP+  +  H S  +LS       + + AC +L +C+   VC
Sbjct: 1153 VFTCLYACVNLSVCVCLPVCFSCVHLSVRVLSPVCPRVFTCLYACVNLSVCVCLPVC 1209



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -2

Query: 380  VYSLLVC*PSMSAIVCLPLLVAL*H*SPMLLSEEWCASVSQMTACQSLLLCILQVVC 210
            V++ L     +S  VCLP+  +  H S  +LS       + + AC +L +C+   VC
Sbjct: 1116 VFTCLYACVHLSVRVCLPVCFSCVHLSVRVLSPVCPRVFTCLYACVNLSVCVCLPVC 1172


>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
          Length = 605

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 81  SHPTGTL-TGSSRTDYPREHKWLI*VQQLHSRSRYKRPY 194
           SHP+ +  +   RTD  R+H+ +  V+Q H + R KR +
Sbjct: 84  SHPSRSRRSAEDRTDQLRQHRHVTWVEQQHEKVREKRGF 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,405,270
Number of Sequences: 59808
Number of extensions: 368988
Number of successful extensions: 663
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)