Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0840
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    89   5e-19
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    28   1.6  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    25   8.6  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   8.6  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    25   8.6  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 89.4 bits (212), Expect = 5e-19
 Identities = 40/85 (47%), Positives = 55/85 (64%)
 Frame = +1

Query: 265 VYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLPLRILLTIFNTIA 444
           +YG  +F      +T IFAI  Y  SGLGITAG HRLW+H++YKA+ PL   L      A
Sbjct: 78  IYG--VFTTPLQTKTLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAAA 135

Query: 445 FQDAVVDWARDHRMHHKYSETVRTP 519
           F+ ++  W+RDHR HH+Y++T + P
Sbjct: 136 FEGSIRWWSRDHRAHHRYTDTDKDP 160



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +3

Query: 513 DPHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDLRNDPILRFQKKYYQILMPLACFI 692
           DP+N  +GF+++H+GW+++ ++P    +    DV+DL +DP + F  +++  +     FI
Sbjct: 159 DPYNVKKGFWYAHVGWMIILQNPRRIGRS---DVSDLNSDPFVMFNHRHFLPIASFMAFI 215

Query: 693 MPT-YVPTLWGE 725
            P+ +   LWG+
Sbjct: 216 FPSLFCGLLWGD 227


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 243 SLFCCRWCLWRVLVPFQSHVEDFYIRH 323
           +LF CR CL  +  P +S +E++ ++H
Sbjct: 101 TLFKCRVCLTNIGQPERSRIENYVLKH 127


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 662 PNFNAFSLFHHAYICTNIVGRNSLEL 739
           P+FNA  L +HAY+  + V  + LE+
Sbjct: 312 PDFNARKLVYHAYVEQSAVINDLLEI 337


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 110 QRKQEASWVLYEADANNLPEDAPPHVPPSAEKRPWKI-VWRN 232
           QR+ E+++ L E D     E +    PP + K P  +  W N
Sbjct: 11  QRRDESAYRLGEEDGRQKGESSRKKRPPLSRKNPSNVSFWSN 52


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 348 QSRTQVQKYGEYRSPPHGFEKEQVPSINTTDSRIKNRITFLHTIFQGLFSAEGG 187
           +SR+   + G     P   EKE++ +INT +    +   F +   + LF A+ G
Sbjct: 5   KSRSSSTRKGSSLKVPEIKEKEKINAINTYEDVANSEDEFYNAQDKILFDADNG 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,559,423
Number of Sequences: 5004
Number of extensions: 82721
Number of successful extensions: 229
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)