Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0840
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0017 + 21546434-21546841 31 0.73
11_01_0535 + 4234282-4235082 30 1.7
11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961... 29 2.9
10_08_0445 + 17989438-17990895 29 2.9
06_01_0445 + 3144526-3145013,3145493-3145814,3146197-3146445 29 2.9
11_01_0488 + 3770410-3770774,3771197-3771284,3771383-3771466,377... 29 3.9
11_01_0043 + 328272-328753,329233-329298,330082-330253,330357-33... 29 3.9
06_03_0002 - 15280292-15281550,15282714-15282840 29 5.2
05_01_0406 + 3197189-3197389,3197491-3197628,3198463-3198544,319... 29 5.2
02_05_0327 + 27980841-27980972,27981673-27981763,27981848-279819... 29 5.2
03_02_0101 - 5623661-5623669,5623756-5624408,5624504-5624640,562... 28 6.8
12_01_0857 - 8043765-8043839,8044215-8044497,8044578-8044748,804... 28 9.0
07_03_1371 - 26100553-26101767 28 9.0
>05_05_0017 + 21546434-21546841
Length = 135
Score = 31.5 bits (68), Expect = 0.73
Identities = 20/57 (35%), Positives = 23/57 (40%)
Frame = +1
Query: 439 IAFQDAVVDWARDHRMHHKYSETVRTPTTQPEDSSFPTLAGCC*GSIPKSKPKAIPS 609
+A A VDWAR R HH S P P S P L C P P + P+
Sbjct: 28 LAVPAAEVDWARQLRHHHGASPASDAPAPSPAPLSTPEL---CRPGEPVPAPSSSPA 81
>11_01_0535 + 4234282-4235082
Length = 266
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 301 WRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLP 408
W + +A FLY C LG A RLW + + P
Sbjct: 220 WTPAAWAFFLYTCVNLGPRARDQRLWYISKFGDKYP 255
>11_03_0072 +
9605273-9606814,9616982-9617016,9617271-9617348,
9617427-9617501,9617583-9617657,9617731-9617977,
9618070-9618313,9618852-9619309,9619388-9619675,
9619751-9619788,9619882-9620452
Length = 1216
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 321 HIFVLVFGIGYHSWRAQT-LGTQVL*SSAATENITHHIQYYRFSGCRSG 464
H+F F Y+ W + + G ++ A ENI + QY RF G ++G
Sbjct: 57 HLFESGFMPSYNCWTSHSEQGVEMEEDEAQDENIPNWAQYARFEGNQTG 105
>10_08_0445 + 17989438-17990895
Length = 485
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = +2
Query: 146 ADANNL-PEDAPPHV--PPSAEKRPWK 217
A A N+ P +PPHV PP+ +RPW+
Sbjct: 407 ATATNMTPPPSPPHVRAPPAPARRPWR 433
>06_01_0445 + 3144526-3145013,3145493-3145814,3146197-3146445
Length = 352
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 439 IAFQDAVVDWARDHRMHHKYSETVRTPTTQPE 534
+A D+V+DW RD+ HH ++ R PT P+
Sbjct: 127 LANDDSVLDW-RDYFDHHTLPDSRRDPTRWPD 157
>11_01_0488 +
3770410-3770774,3771197-3771284,3771383-3771466,
3772128-3772224,3772324-3772411,3772800-3772848,
3773044-3773238,3773713-3774159
Length = 470
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 225 GEM*FCSLFCCRWCLWRVLVPFQSHV 302
G+ F +L CC W W+V+ + H+
Sbjct: 228 GKSYFGALLCCSWRTWKVIFDYALHI 253
>11_01_0043 +
328272-328753,329233-329298,330082-330253,330357-330565,
330779-330937,331279-331627
Length = 478
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -2
Query: 405 QPSFIGLVCPKSV-RASCDTQSRTQVQKYGEYRSPPHGFEKEQVPSINTTDSRIKN 241
+P + GL C +CD R KY +R PHG +VP N R K+
Sbjct: 120 RPLYSGLKCSFIFDEVACDKYGRNDT-KYQHWRWQPHGCNLPRVPGANWKTYREKS 174
>06_03_0002 - 15280292-15281550,15282714-15282840
Length = 461
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +2
Query: 179 PHVPPSAEKRP---WKIVWRNVILFFILLSVVFMEGTCSF 289
P PP A++RP + +WR V+L LS+V CS+
Sbjct: 140 PPAPPGAKRRPVRPLRSLWRVVLLCTECLSLVRSAAVCSY 179
>05_01_0406 +
3197189-3197389,3197491-3197628,3198463-3198544,
3198658-3198734,3198829-3198935,3199367-3199505,
3200602-3200718,3200850-3200941,3201096-3201162,
3201249-3201355,3201468-3201546,3201751-3201894,
3202095-3202235
Length = 496
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +3
Query: 519 HNATRGFFFSHIGWLLLRKHPEI----KAKGHTVDVNDLRNDPILRFQKKYYQILMPLAC 686
HN T G HI WL + + I A VN++ D + F KKY+ + +A
Sbjct: 148 HNLTYGIDLDHIRWLGVLQRIAIGYFLAAISEIWLVNNISVDSAISFVKKYFMEWI-VAV 206
Query: 687 FIMPTYVPTLWGETVWN 737
I YV L G V N
Sbjct: 207 MISALYVGLLLGLYVSN 223
>02_05_0327 +
27980841-27980972,27981673-27981763,27981848-27981900,
27981990-27982154,27982544-27982662,27982880-27982997,
27983096-27983173,27983326-27983424
Length = 284
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 212 WKIVWRNVILFFILLSVVFMEGTCSFSKPCGGLLY 316
W ++W N I+LS +F+ G SFS G LLY
Sbjct: 151 WALLWHNPNPSMIVLSKLFIAG-LSFSAALGFLLY 184
>03_02_0101 -
5623661-5623669,5623756-5624408,5624504-5624640,
5626032-5626609
Length = 458
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 262 GVYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAH 369
G GY L+ +W T + A+ L + LG+ G H
Sbjct: 97 GAAAGYQLLWLLLWATVMGALVQLLSARLGVATGKH 132
>12_01_0857 -
8043765-8043839,8044215-8044497,8044578-8044748,
8044826-8045670,8045828-8046262,8046339-8046563,
8046700-8046781,8046814-8047067
Length = 789
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 77 NQYIVSVKMPPQRKQEASWVLYEADA--NNLPEDAPPHVPPSAEK 205
+Q +VS+ +++ E + Y+ D + + D+ PH+PPSA++
Sbjct: 437 HQTVVSLPPAVEQRDEDLQLQYDTDFWDDGMEVDSRPHLPPSAKR 481
>07_03_1371 - 26100553-26101767
Length = 404
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 620 IIHVDGMAFGFDFGMLPQQQPANVGKEESSGCVVGVRTV 504
I +VDG+ P + GKEE +GC+ GV V
Sbjct: 111 IANVDGVTADLGHCNTPAKVAGFTGKEELAGCLAGVDVV 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,659,215
Number of Sequences: 37544
Number of extensions: 567469
Number of successful extensions: 1679
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1678
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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