Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0840
(745 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0) 110 1e-24
SB_42121| Best HMM Match : EGF_CA (HMM E-Value=8.7) 41 0.001
SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0) 31 1.3
SB_12261| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76) 30 2.3
SB_44412| Best HMM Match : DUF1070 (HMM E-Value=0.76) 30 2.3
SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_11417| Best HMM Match : zf-TAZ (HMM E-Value=0.91) 29 5.3
SB_52435| Best HMM Match : RYDR_ITPR (HMM E-Value=1.4) 28 7.0
SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44) 28 9.2
>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
Length = 268
Score = 110 bits (265), Expect = 1e-24
Identities = 41/78 (52%), Positives = 62/78 (79%)
Frame = +3
Query: 510 ADPHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDLRNDPILRFQKKYYQILMPLACF 689
ADPHNA RGFFFSH+GWL+ RKHP++ KG +D++DL D ++ FQ+++Y+ + L C
Sbjct: 73 ADPHNAKRGFFFSHVGWLMQRKHPDVIRKGKGIDLSDLYADSVVMFQRRHYKKISMLMCV 132
Query: 690 IMPTYVPTLWGETVWNSF 743
++PT VP+LWGE++WN++
Sbjct: 133 LIPTLVPSLWGESLWNAY 150
Score = 91.9 bits (218), Expect = 5e-19
Identities = 35/64 (54%), Positives = 51/64 (79%)
Frame = +1
Query: 328 LYLCSGLGITAGAHRLWAHKSYKARLPLRILLTIFNTIAFQDAVVDWARDHRMHHKYSET 507
L LC G G+T GAHRLWAH+++KA+ PLR+++ + N++A Q+ + +W+RDHR+HHKYSET
Sbjct: 12 LSLCRGYGVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKYSET 71
Query: 508 VRTP 519
P
Sbjct: 72 DADP 75
>SB_42121| Best HMM Match : EGF_CA (HMM E-Value=8.7)
Length = 202
Score = 41.1 bits (92), Expect = 0.001
Identities = 13/29 (44%), Positives = 23/29 (79%)
Frame = +3
Query: 657 YYQILMPLACFIMPTYVPTLWGETVWNSF 743
+Y+ + L C ++PT VP+LWGE++WN++
Sbjct: 2 HYKKISMLMCVLIPTLVPSLWGESLWNAY 30
>SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1252
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 618 DLRNDPILRFQKKYYQILMPL--ACFIMPTYVPTLWGETVWNSF 743
D+ N PILR+ +Y + P+ ++ P + TL G WN +
Sbjct: 407 DMPNGPILRYHVTFYDVQTPVQGGTYLAPGTLYTLTGLGPWNEY 450
>SB_12261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 620 IIH-VDGMAFGFDFGMLPQQQPANVGKEESSGCVVG 516
++H V G FG DF PAN G E S C VG
Sbjct: 339 VVHGVRGGVFGEDFAQHLAPNPANTGDEASYDCGVG 374
>SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)
Length = 544
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 620 IIH-VDGMAFGFDFGMLPQQQPANVGKEESSGCVVG 516
++H V G FG DF PAN G E S C VG
Sbjct: 305 VVHGVRGGVFGEDFAQHLAPNPANTGDEASYDCGVG 340
>SB_44412| Best HMM Match : DUF1070 (HMM E-Value=0.76)
Length = 632
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 620 IIH-VDGMAFGFDFGMLPQQQPANVGKEESSGCVVG 516
++H V G FG DF PAN G E S C VG
Sbjct: 541 VVHGVRGGVFGEDFAQHLAPNPANTGDEASYDCGVG 576
>SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 935
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 268 KHHRQQNKEQNHISPHNLPRSLLC*GRYMGR 176
K+H+Q++ ++H+SP P+ LL ++ GR
Sbjct: 383 KNHQQRDISKDHVSPQYAPKPLLSRRKHAGR 413
>SB_11417| Best HMM Match : zf-TAZ (HMM E-Value=0.91)
Length = 390
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -3
Query: 611 VDGMAFGFDFGMLPQQQPANVGKEESSGCVVG 516
V G FG DF PAN G E S C VG
Sbjct: 155 VRGGVFGEDFAQHLAPNPANTGDEASYDCGVG 186
>SB_52435| Best HMM Match : RYDR_ITPR (HMM E-Value=1.4)
Length = 954
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 243 SLFCCRWCLWRVLVPFQSHVEDFYIRHIFVLV 338
SL C WCL RV+ F SH D +R I V V
Sbjct: 808 SLHCNDWCLARVVEAFTSH--DGLVRSIKVAV 837
>SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)
Length = 350
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 310 SIFAIFLYLCSGLGITAGAHRLWAHKSY 393
++F I + LG+++ H WAHK+Y
Sbjct: 148 AVFVIIVAWALALGVSSLIHVTWAHKAY 175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,153,893
Number of Sequences: 59808
Number of extensions: 648112
Number of successful extensions: 1665
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1665
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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