Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0839
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23667| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 2e-10
SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38) 31 1.00
SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_46897| Best HMM Match : zf-CCHC (HMM E-Value=0.12) 28 7.0
SB_28743| Best HMM Match : PCI (HMM E-Value=0.00094) 28 7.0
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_5252| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54) 28 9.3
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_23667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 63.7 bits (148), Expect = 2e-10
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +1
Query: 340 QGQPAQGPCAWEIKQFLECAQQQHDLSLCDGFNEALRQCKVNN 468
QGQ Q PC +E++QF+ECAQ D+++C GFNEALRQCK+ N
Sbjct: 108 QGQQ-QNPCQYELQQFVECAQNNSDMNMCQGFNEALRQCKLYN 149
>SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)
Length = 1851
Score = 31.1 bits (67), Expect = 1.00
Identities = 21/64 (32%), Positives = 27/64 (42%)
Frame = +2
Query: 269 VVVEAASQPSNSKQLLQLKPTINTRDSRLKDHARGRSSNSWNVLNNSTTCHSVMASMKLY 448
V E A+Q +K L+ P+IN R L H+ R S N+ T H A LY
Sbjct: 1255 VANEIAAQEEIAKPDLESLPSINDRRQSLGGHSHRRRSTVLNLDTRRGTLHQREAQCLLY 1314
Query: 449 VNAK 460
K
Sbjct: 1315 FQRK 1318
>SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 326 PTINTRDSRLKDHARGRSSNSWNVLNNSTTCHSVMASMKL 445
P I+T D LKD A+GR +NS N L + + A+M L
Sbjct: 748 PYIHTPDDSLKDTAKGRENNSINSLPLDISQNREKAAMGL 787
>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 248 YQPHDPQPILQLRHQPWQPS 189
Y P P +LRHQPW+PS
Sbjct: 1016 YLPEKPAACDRLRHQPWKPS 1035
>SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1810
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 703 DYRFSHWKTKFPFTLKIIATWQVPQIAQS 617
D+ SH++ PFT K WQVP A S
Sbjct: 1190 DFLHSHFRQDLPFTEKTPRDWQVPMRAGS 1218
>SB_46897| Best HMM Match : zf-CCHC (HMM E-Value=0.12)
Length = 303
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 340 QGQPAQGP--CAWEIKQFLECAQQQHDLSLCDGFNEALRQCKVNNH 471
+ QP GP A + + C +Q+HD LC N+ +C H
Sbjct: 213 KSQPKGGPQGSAQGKSKCMFCGKQKHDHQLCPAKNDTCHKCNKRVH 258
>SB_28743| Best HMM Match : PCI (HMM E-Value=0.00094)
Length = 322
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = +2
Query: 326 PTINTRDSRLKDHARGRSSNSWNVLNNSTTCHSVMASMKLYVN 454
P + + L DH + ++++ +L+ + H+++++ KLY N
Sbjct: 175 PELQEFSTMLMDHQKAKTADGSTILDRAVIEHNLLSASKLYNN 217
>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 340 QGQPAQGP--CAWEIKQFLECAQQQHDLSLCDGFNEALRQCKVNNH 471
+ QP GP A + + C +Q+HD LC N+ +C H
Sbjct: 195 KSQPKGGPQGSAQGKSKCMFCGKQKHDHQLCPAKNDTCHKCNKRVH 240
>SB_5252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 541
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 40 NHASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGC 198
NHA +++ + +SK++C PAK + P Y SST I +GC
Sbjct: 233 NHA-LKELWRYLCRSSKKTCDPAKPAKIPFRNTTPSYLLSSTRQQAGIVNEGC 284
>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
Length = 776
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 52 TRKISKPSTSASKESCSPAK*CTSSC 129
TR+ +P +S E +PA CTSSC
Sbjct: 715 TRRRHRPIEGSSSEPDTPASSCTSSC 740
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 278 PPPLNIPVEHYQPHDPQPILQLRHQPWQPSARI 180
PPP+ PV+ Y P PQ Q P +R+
Sbjct: 329 PPPIRAPVDVYPPRAPQGASQTPPYPGSHYSRV 361
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,920,420
Number of Sequences: 59808
Number of extensions: 391761
Number of successful extensions: 3076
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3072
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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