Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0839
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46787-10|CAA86749.1| 154|Caenorhabditis elegans Hypothetical p... 60 1e-09
Z81506-2|CAB04129.1| 257|Caenorhabditis elegans Hypothetical pr... 29 4.7
AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical... 29 4.7
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical... 29 4.7
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p... 28 8.1
Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical p... 28 8.1
AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protei... 28 8.1
>Z46787-10|CAA86749.1| 154|Caenorhabditis elegans Hypothetical
protein C16C10.11 protein.
Length = 154
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/67 (43%), Positives = 38/67 (56%)
Frame = +1
Query: 259 GMFSGGGSSEXXXXXXXXXXXXTYNQYQGQPAQGPCAWEIKQFLECAQQQHDLSLCDGFN 438
GMF+GGGSS Q G PC +E +QF++CAQ Q D+SLC+GFN
Sbjct: 86 GMFTGGGSSHAEQAPAAAAAPAGAPQASGYSQ--PCEFEWRQFVDCAQNQSDVSLCNGFN 143
Query: 439 EALRQCK 459
+ +QCK
Sbjct: 144 DIFKQCK 150
>Z81506-2|CAB04129.1| 257|Caenorhabditis elegans Hypothetical
protein F16H6.3 protein.
Length = 257
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 73 STSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALA 180
+T+ ++ SCS + TS+C S +P DSSS+ AA A
Sbjct: 198 ATTTTQASCSSSGGSTSTCTSYNP--DSSSSCAAWA 231
>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
protein Y105C5B.21b protein.
Length = 1084
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 260 VCLVVVEAASQPSNSKQLLQLKPTINT 340
V +V ASQPS + ++ L+PT NT
Sbjct: 325 VISIVDNIASQPSETSDIIHLRPTCNT 351
>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
protein Y105C5B.21a protein.
Length = 1254
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 260 VCLVVVEAASQPSNSKQLLQLKPTINT 340
V +V ASQPS + ++ L+PT NT
Sbjct: 495 VISIVDNIASQPSETSDIIHLRPTCNT 521
>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 269 VVVEAASQPSNSKQLLQLKPTINTRDSRLKDHARGRSSNSWNVLN-NSTTCHSVMASMKL 445
V+V A ++PS Q +L P + R + A G + SW+ N S++ +S+ ++ K
Sbjct: 117 VMVAAKTRPSEGSQTEKLWPPTSVRARIDEKSAAGSAFVSWDDPNPESSSENSIDSTQKQ 176
Query: 446 YV 451
YV
Sbjct: 177 YV 178
>Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 269 VVVEAASQPSNSKQLLQLKPTINTRDSRLKDHARGRSSNSWNVLN-NSTTCHSVMASMKL 445
V+V A ++PS Q +L P + R + A G + SW+ N S++ +S+ ++ K
Sbjct: 117 VMVAAKTRPSEGSQTEKLWPPTSVRARIDEKSAAGSAFVSWDDPNPESSSENSIDSTQKQ 176
Query: 446 YV 451
YV
Sbjct: 177 YV 178
>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 269 VVVEAASQPSNSKQLLQLKPTINTRDSRLKDHARGRSSNSWNVLN-NSTTCHSVMASMKL 445
V+V A ++PS Q +L P + R + A G + SW+ N S++ +S+ ++ K
Sbjct: 117 VMVAAKTRPSEGSQTEKLWPPTSVRARIDEKSAAGSAFVSWDDPNPESSSENSIDSTQKQ 176
Query: 446 YV 451
YV
Sbjct: 177 YV 178
>Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 269 VVVEAASQPSNSKQLLQLKPTINTRDSRLKDHARGRSSNSWNVLN-NSTTCHSVMASMKL 445
V+V A ++PS Q +L P + R + A G + SW+ N S++ +S+ ++ K
Sbjct: 117 VMVAAKTRPSEGSQTEKLWPPTSVRARIDEKSAAGSAFVSWDDPNPESSSENSIDSTQKQ 176
Query: 446 YV 451
YV
Sbjct: 177 YV 178
>AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protein
protein.
Length = 1117
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 269 VVVEAASQPSNSKQLLQLKPTINTRDSRLKDHARGRSSNSWNVLN-NSTTCHSVMASMKL 445
V+V A ++PS Q +L P + R + A G + SW+ N S++ +S+ ++ K
Sbjct: 117 VMVAAKTRPSEGSQTEKLWPPTSVRARIDEKSAAGSAFVSWDDPNPESSSENSIDSTQKQ 176
Query: 446 YV 451
YV
Sbjct: 177 YV 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,947,685
Number of Sequences: 27780
Number of extensions: 299260
Number of successful extensions: 731
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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