Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0839
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   4.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   4.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.3  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 584 N*MYRHISEIKLSMIFLLKQSFSEQINGHLYQ 489
           N +++++S+I+   I      + E  NG++YQ
Sbjct: 413 NNIFKNMSQIEREAITFQYTDWEEVYNGYIYQ 444


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 584 N*MYRHISEIKLSMIFLLKQSFSEQINGHLYQ 489
           N +++++S+I+   I      + E  NG++YQ
Sbjct: 413 NNIFKNMSQIEREAITFQYTDWEEVYNGYIYQ 444


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = +1

Query: 61  ISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAAL 177
           +S PST      C+  +   S C      Y +  T + L
Sbjct: 343 VSYPSTETLNTKCNTLERTPSKCSQTSVHYSNGQTHSQL 381


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 127 TSWYITWRGSSS 92
           T+WY+ W+G  S
Sbjct: 672 TNWYMGWKGMLS 683


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,442
Number of Sequences: 438
Number of extensions: 3975
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)